Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57330 734 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT2G41560 732 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT2G22950 613 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT4G37640 612 / 0 ACA2 calcium ATPase 2 (.1) AT1G27770 602 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT5G57110 414 / 7e-133 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT4G29900 413 / 1e-132 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT3G21180 409 / 1e-130 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 325 / 2e-99 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 296 / 4e-89 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042040 [exp] 1038 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10035439 [exp] 954 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10031053 [exp] 947 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10016366 [exp] 736 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10018687 [exp] 603 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10019300 [exp] 602 / 0 AT4G37640 1628 / 0.0 calcium ATPase 2 (.1) Lus10007736 [exp] 601 / 0 AT1G27770 1528 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10011522 [exp] 595 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10025199 [exp] 565 / 0 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046500 [exp] 808 / 0 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Potri.016G043100 [exp] 807 / 0 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.001G020600 [exp] 746 / 0 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.003G204000 [exp] 710 / 0 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.007G055500 [exp] 602 / 0 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.014G016600 [exp] 595 / 0 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.006G072900 [exp] 424 / 9e-137 AT4G29900 1549 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 412 / 5e-132 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.008G008100 [exp] 406 / 1e-129 AT3G21180 1562 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.018G139800 [exp] 398 / 1e-126 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12515 [flax] [poplar] CaATP_NAI Ca2+-ATPase N terminal autoinhibitory domain PF00690 [flax] [poplar] Cation_ATPase_N Cation transporter/ATPase, N-terminus PF00122 [flax] [poplar] E1-E2_ATPase E1-E2 ATPase
Representative CDS sequence Show only first row Show all	>Lus10018045 pacid=23147961 polypeptide=Lus10018045 locus=Lus10018045.g ID=Lus10018045.BGIv1.0 annot-version=v1.0 ATGGAGAAGTACTTGAAAAACTTCGAAGTGGACCACAAAAATCCATCTGACGAAGCGTTGATGCGATGGCGGAGAGCTGTTACCATCGTCAAGAACCCTC GCCGGAGGTTCCGCAACGTCGCCGATCTAGCCAAGCGCTCGGAGGCCGAACGCAAAAAGCGCAGTATCCAGGAAAAGATACGTGTTGCACTATACGTCAA AAAGGCTGCATTACAGTTTATTGATGCTGGTGCGGCCCATGATGTTACAGCTGGTAACCAACCTGAGACCAAGGTGTCAGACGAGGTTAGAAAATCTGGT TTTGGAATTGAAGCTGATGAGATTGCTTCCATTGTCCGTGATCACGATCTCAAGACTTTGAAAACCAGTGGTGGAGTGGAAGGGATCGCAACAAAAGTAG CCGTGTCTTTGAACGAAGGTGTTCACGCAAACAACGTACATGTTCGGCAAAGTATCTATGGCAGCAATTCTTATACCGAGAAGCCCCCTAAAAGCTTCTT CATGTTCGTTTGGGAGGCACTGCAGGATTTGACTTTAATTATCCTTATGGTATGTGCCGTAATTTCAATAGGGGTCGGGATTGCTACTGAAGGATGGCCA AAAGGAATGTATGACGGGTTGGGAATTTTGCTCAGTATACTCTTGGTAGTCATGGTCACTGCTATAAGTGACTACAAGCAATCCTTACAGTTTCGGGATT TGGATAAAGAGAAGAAGAAAATTTCTATTCAGGTCACAAGGGATGGGCGTAAACAAGAAGTTTCCATTTTTGATTTGGTCGTGGGAGACATAGTCCAGTT ATCAATCGGAGACGTAGTGCCAGCTGATGGGATTTTTATATCTGGATATAGCTTAGTAATCGATGAGTCGAGCTTATCCGGGGAGAGTGAGCCTGTGAAT ATAGATAAATCAAAACCTTTTCTTCTCTCAGGAACCAGAGTCCAAGATGGATCAGGAAGCATGCTTGTGACTGCTGTTGGGATGAAGACTGAATGGGGCA AGCTGATGGAAACTTTGAACGAGGGTGGAGAAGATGAAACACCACTGCAGGTAAAACTGAATGGTGTAGCTACAATCATTGGAAAGATAGGCCTGGGTTT CGCTGTGCTGACATTTGTGGTATTGACAGTGAGATTCTTCTGGACCAAAATATCAAATAATGAGCTCACGGAATGGTCCTCAACTGATGCATTGACGCTT CTGGACTATTTTGCTATTGCAGTAACCATAATTGTTGTTGCAGTTCCTGAAGGGTTACCATTGGCAGTTACTTTAAGTCTGGCATTTGCAATGAAGAAAC TAATGGATGAGAAGGCCCTTGTTAGGCATTTGTCTGCTTGTGAGACGATGGGTTCGGCTAGTTGCATCTGCACAGATAAGACCGGGACATTGACAACTAA CCACATGATAGTTGATAAGATATGCATAAGTGGGAAAACAAAAAGTATAAGTCAAGATAGTTCAGGAGTTGGATCTTCTGAAAGAGTTCTGAGCCTTCTT CTGCAAGCTATATTCCAAAACACTGGTTGTGAAATGACCAAAGATGAAGATGGAAATTCCAAGATATTGGGAACTCCAACAGATAAAGCGCTGTTTGAAT TAGGCTTGCATTTGGGGGCAGACTTGGATGCACAGCGTAGAGAGTTTAATATACTGAAAGTTGAACCATTTAATTCTGTTAAGAAGAAGATGTCTTCACT TGTAGCTCTTCCTGAAGGTGGCTTGTGA
AA sequence Show only first row Show all	>Lus10018045 pacid=23147961 polypeptide=Lus10018045 locus=Lus10018045.g ID=Lus10018045.BGIv1.0 annot-version=v1.0 MEKYLKNFEVDHKNPSDEALMRWRRAVTIVKNPRRRFRNVADLAKRSEAERKKRSIQEKIRVALYVKKAALQFIDAGAAHDVTAGNQPETKVSDEVRKSG FGIEADEIASIVRDHDLKTLKTSGGVEGIATKVAVSLNEGVHANNVHVRQSIYGSNSYTEKPPKSFFMFVWEALQDLTLIILMVCAVISIGVGIATEGWP KGMYDGLGILLSILLVVMVTAISDYKQSLQFRDLDKEKKKISIQVTRDGRKQEVSIFDLVVGDIVQLSIGDVVPADGIFISGYSLVIDESSLSGESEPVN IDKSKPFLLSGTRVQDGSGSMLVTAVGMKTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLGFAVLTFVVLTVRFFWTKISNNELTEWSSTDALTL LDYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMDEKALVRHLSACETMGSASCICTDKTGTLTTNHMIVDKICISGKTKSISQDSSGVGSSERVLSLL LQAIFQNTGCEMTKDEDGNSKILGTPTDKALFELGLHLGADLDAQRREFNILKVEPFNSVKKKMSSLVALPEGGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Lus10018045 [exp]	0	1
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10018044 [exp]	7.3	0.8776
AT1G25520			Uncharacterized protein family...		Lus10021697 [exp]	28.5	0.8279
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Lus10027791 [exp]	50.5	0.7888
AT1G53600			Tetratricopeptide repeat (TPR)...		Lus10008607 [exp]	72.7	0.7862
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	242.3	0.7641
AT4G37560			Acetamidase/Formamidase family...		Lus10019293 [exp]	266.4	0.7593

Compare expression of checked genes

Lus10018045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.