Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10320 510 / 1e-178 Glycosyltransferase family 61 protein (.1) AT2G41640 499 / 4e-174 Glycosyltransferase family 61 protein (.1.2) AT3G57380 491 / 4e-171 Glycosyltransferase family 61 protein (.1) AT2G03370 296 / 2e-95 Glycosyltransferase family 61 protein (.1) AT2G03360 293 / 2e-94 Glycosyltransferase family 61 protein (.1.2) AT3G18170 219 / 1e-66 Glycosyltransferase family 61 protein (.1) AT3G18180 220 / 4e-66 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018048 [exp] 545 / 0 AT2G41640 569 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 534 / 0 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10035441 [exp] 533 / 0 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10042043 [exp] 491 / 5e-174 AT3G10320 335 / 1e-112 Glycosyltransferase family 61 protein (.1) Lus10036806 [exp] 250 / 2e-77 AT2G03370 381 / 4e-129 Glycosyltransferase family 61 protein (.1) Lus10042044 [exp] 238 / 3e-71 AT2G41640 257 / 4e-78 Glycosyltransferase family 61 protein (.1.2) Lus10036003 [exp] 224 / 5e-67 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1) Lus10016707 [exp] 223 / 2e-66 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1) Lus10031058 [exp] 222 / 4e-63 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048500 [exp] 573 / 0 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.016G057000 [exp] 564 / 0 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 278 / 2e-88 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 278 / 2e-88 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 276 / 2e-87 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.015G042300 [exp] 235 / 8e-71 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.012G051500 [exp] 232 / 1e-69 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 225 / 2e-67 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10018046 pacid=23147861 polypeptide=Lus10018046 locus=Lus10018046.g ID=Lus10018046.BGIv1.0 annot-version=v1.0 ATGATCGTTTACAGGAAATGGAATGCAGGCATGGGGTGGAACCAGCTGAATCGTCGTCCCAAGTTTCTCCATGTCCTCCTTCTCTTTCTCTTCCTCCCCT CTTGCATCCTCATCTTTGCTCTTCTTCACAGCTTCCCTCCCTCCACACATTCATCATCCCATTCTCTAGGTGATGATCATATCCACTCCAATGGAAATGG TCCCACCTCATGTCTTAGCGCAAATATATCATGTGACAGAAGCAGCATCAGGACAGACGTCTGCGTAATGAAAGGATGCCTGATCTCAACTCATTCCCCA TCCGCATCTCTCATCCTCCACACCTCACAATCAACATCATCAGCATCAACCATCAACTCCTCCACCGAAATCCAGCACGAAAAAATCCGACCATACACCC GAAAATGGGAGACCAGCGTCATGAACACCATCGACGAGCTCCACCTCATCATCAAAATCCCAGACGACAGCAACATTAACAATCACAGCAACTGCGACGT CACCCACAACGTCCCGGCTGTGTTCTTCTCCACAGGAGGGTACACGGGAAACGTCTACCACGAGTTCAACGACGGGCTAATCCCGCTCTACATCACGTCC CAGCATTTCAACAAACAGGTGGTGTTCGTCATCTTGGAGTACCACGACTGGTGGATATCCAAGTACGGGGATGTTCTCTCCCAGCTCTCAAATTACTCTG CCGTCGACTTCAATGGGGACAACAGGACGCATTGCTTCCCGGAAGCCATCGTCGGCCTCAAAATCCATGACGAGCTCGCAATCGACCCTTCCCTGAGCAA CAACAGGACCACCATCGTGGACTTCCACAACCTCCTTGACCGGGCTTACTGGCCTCGAATCAGTTTCCTCCTCCAGTGTCCAGCGCCACTGCAGATAGAG AGTCACATATTCAACAACAGCAAACCCCACGTCCCGAAGCTAGCCATCGTCTCTCGAAAAGGATCCCGAGCCGTAACGAACGAGGAATCGCTGGTAAAAC TGGGGGAAAAAATCGGATTCCAAGTAGAAATACTTCGTCCCGACAGAACCACGGAGCTGGCAAAGATATACAGGGCGCTGAACTGGAGCGACGTGATGAT CGGAGTGCACGGAGCGGCGATGACGCACCTCTTGTTCATGAGGCCCGGTAGCGTGTTCATCCAGGTGATTCCATTGGGCCTGGAGTGGGCTTCGGAGACG TATTACGGAGAGCCCGCGAGGAAGATGGGCTTGAAGTACATTGGGTACAGGATTTTGCCGAGGGAAAGCTCGCTGTATGACAAGTATGACGAGAATGACC CTGTGCTTAGAGATCCGCAGAGTGTTTCGGCTAGAGGGTGGAATTGGACCAAGGCTATCTATCTTGATGCTCAGAATGTTGTGTTGGATGTTGAGAGGTT TGAGAAAAGGTTATTGAGGGCTTATCGATATGTTTATGGTAAGATTAACGTGAAGAATTGA
AA sequence Show only first row Show all	>Lus10018046 pacid=23147861 polypeptide=Lus10018046 locus=Lus10018046.g ID=Lus10018046.BGIv1.0 annot-version=v1.0 MIVYRKWNAGMGWNQLNRRPKFLHVLLLFLFLPSCILIFALLHSFPPSTHSSSHSLGDDHIHSNGNGPTSCLSANISCDRSSIRTDVCVMKGCLISTHSP SASLILHTSQSTSSASTINSSTEIQHEKIRPYTRKWETSVMNTIDELHLIIKIPDDSNINNHSNCDVTHNVPAVFFSTGGYTGNVYHEFNDGLIPLYITS QHFNKQVVFVILEYHDWWISKYGDVLSQLSNYSAVDFNGDNRTHCFPEAIVGLKIHDELAIDPSLSNNRTTIVDFHNLLDRAYWPRISFLLQCPAPLQIE SHIFNNSKPHVPKLAIVSRKGSRAVTNEESLVKLGEKIGFQVEILRPDRTTELAKIYRALNWSDVMIGVHGAAMTHLLFMRPGSVFIQVIPLGLEWASET YYGEPARKMGLKYIGYRILPRESSLYDKYDENDPVLRDPQSVSARGWNWTKAIYLDAQNVVLDVERFEKRLLRAYRYVYGKINVKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10320			Glycosyltransferase family 61 ...		Lus10018046 [exp]	0	1
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	5.0	0.8612
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	7.1	0.8612
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	8.7	0.8612
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	10.0	0.8612
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	11.2	0.8612
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	12.2	0.8612
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	13.2	0.8612
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	14.1	0.8612
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10038657 [exp]	15.0	0.8612
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10039859 [exp]	15.8	0.8612

Compare expression of checked genes

Lus10018046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.