Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74100 207 / 1e-64 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT1G18590 202 / 1e-62 SOT17, ATSOT17, ATST5C ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) AT3G45070 201 / 3e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 200 / 8e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G74090 194 / 3e-59 SOT18, ATSOT18, ATST5B ARABIDOPSIS SULFOTRANSFERASE 5B, desulfo-glucosinolate sulfotransferase 18 (.1) AT1G13420 190 / 7e-58 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT2G03770 189 / 2e-57 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G14920 187 / 1e-56 ATST4A ARABIDOPSIS THALIANA SULFOTRANSFERASE 4A, sulfotransferase 4A (.1) AT5G43690 186 / 2e-56 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07000 186 / 3e-56 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033721 [exp] 416 / 1e-141 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10033720 [exp] 399 / 1e-139 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031623 [exp] 384 / 1e-133 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) Lus10033718 [exp] 380 / 5e-132 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10003070 [exp] 362 / 6e-125 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031624 [exp] 358 / 2e-123 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033716 [exp] 349 / 4e-120 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033719 [exp] 346 / 9e-119 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034079 [exp] 328 / 4e-112 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193300 [exp] 223 / 1e-70 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 220 / 2e-69 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048400 [exp] 215 / 1e-67 AT1G18590 248 / 2e-80 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048300 [exp] 215 / 2e-67 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G048200 [exp] 214 / 3e-67 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.004G031400 [exp] 211 / 1e-65 AT1G13420 248 / 2e-80 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.011G048712 [exp] 209 / 2e-65 AT1G18590 265 / 1e-86 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G049100 [exp] 209 / 2e-65 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.012G032700 [exp] 209 / 2e-65 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.003G193250 [exp] 207 / 2e-64 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10018047 pacid=23147979 polypeptide=Lus10018047 locus=Lus10018047.g ID=Lus10018047.BGIv1.0 annot-version=v1.0 ATGAGTTCCACAGATGTTGGTCATCATGATGATAAAAACAAGCTTCCAATTATGACCAACAATAAACAAGTGTCGTTCTGGGATGCACTCGAGATTCGCG AGGTCGAAGGGTTCTGGTACCCTAGCCAAGTTATGGCCTCCATCGATGCTTTCAGAGCAAACTTCAAGCCCAAACGGGACGACGTCGTAATCTTGGCATC TTCCATGAAAACAGGAACCACCTGGCTCTTGGCTCTCGCTTACTGCATCCTCTCTAGAGATCATAAAGATGAAGAAGAAGAAGACCTTCTCACCAAGATG AATCCTCATCTTTGTGTTCCCTCTTTGGTCAGTAGGGTGTATTTCGATGATGCCCCAGGACCTCCTGTTGATCAAGACAAGTGCCGGCTGTTCAACACTC ATATGCCCTTCAGCTACCTCCCGGATTCGATCACAAATAACGACAGTACCTGTAAATTGGTTTACATAACTCGAGACCCAAAGGACACACTGGTGTCTCT CTGGCACTTCTTCAACAAAATCTACAGATCGGACAACAACCTCGATCCATTATCACTCGAAAAAGCCGCAGACAACTTCTGCAGCGGAGCGATCCCCTAC GGACCGTTCCACGAGCATGTGTTGGAGTTCTGGGAAGCCAGCAAGAAATCCCCCGAAAAAGTGATGTTCATCAAGTACGAGGATCTCCGTCGCGATCCCA AGCCTCTGGTCCGCAAACTGGCCTCCTTTTTGGGAAAGCCTTTTGGGGAAGCTGATGATGGTGATGTTGAGAATGTGATATGGAGAAGCAGCTTTGACCG GCTTACGAATTTGGACGTGAATAAGTCGTCGACGGGGAATAAGTGGAATCCGGCGTTGGTTCCGAAGTTGACTAACGACCTATTCTTTCGACGTGGCGAG ATTGGAGACTGGAGGAATCACTTGACCCCTGAGATTACAAAACGTGTCCATGATGTTACGCGGGTTAAGTATCGAGGTACTGGGCTTTATCTTGATGATG ATGATGATGATGATGCGTAG
AA sequence Show only first row Show all	>Lus10018047 pacid=23147979 polypeptide=Lus10018047 locus=Lus10018047.g ID=Lus10018047.BGIv1.0 annot-version=v1.0 MSSTDVGHHDDKNKLPIMTNNKQVSFWDALEIREVEGFWYPSQVMASIDAFRANFKPKRDDVVILASSMKTGTTWLLALAYCILSRDHKDEEEEDLLTKM NPHLCVPSLVSRVYFDDAPGPPVDQDKCRLFNTHMPFSYLPDSITNNDSTCKLVYITRDPKDTLVSLWHFFNKIYRSDNNLDPLSLEKAADNFCSGAIPY GPFHEHVLEFWEASKKSPEKVMFIKYEDLRRDPKPLVRKLASFLGKPFGEADDGDVENVIWRSSFDRLTNLDVNKSSTGNKWNPALVPKLTNDLFFRRGE IGDWRNHLTPEITKRVHDVTRVKYRGTGLYLDDDDDDDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10018047 [exp]	0	1
					Lus10026928 [exp]	2.6	0.9699
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	3.7	0.9699
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	4.6	0.9699
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	5.3	0.9699
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	5.9	0.9699
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	6.0	0.9205
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	6.9	0.9652
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	7.0	0.9650
AT2G37010		ATNAP12	non-intrinsic ABC protein 12 (...		Lus10023199 [exp]	8.0	0.9368
AT4G38840			SAUR-like auxin-responsive pro...		Lus10009621 [exp]	8.7	0.8914

Compare expression of checked genes

Lus10018047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.