Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41640 540 / 0 Glycosyltransferase family 61 protein (.1.2) AT3G57380 526 / 0 Glycosyltransferase family 61 protein (.1) AT3G10320 506 / 2e-176 Glycosyltransferase family 61 protein (.1) AT2G03370 275 / 9e-87 Glycosyltransferase family 61 protein (.1) AT2G03360 268 / 3e-84 Glycosyltransferase family 61 protein (.1.2) AT3G18170 226 / 7e-69 Glycosyltransferase family 61 protein (.1) AT3G18180 222 / 2e-66 Glycosyltransferase family 61 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035441 [exp] 609 / 0 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 603 / 0 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10018046 [exp] 546 / 0 AT3G10320 530 / 0.0 Glycosyltransferase family 61 protein (.1) Lus10042044 [exp] 367 / 4e-120 AT2G41640 257 / 4e-78 Glycosyltransferase family 61 protein (.1.2) Lus10042043 [exp] 315 / 5e-104 AT3G10320 335 / 1e-112 Glycosyltransferase family 61 protein (.1) Lus10036806 [exp] 266 / 3e-83 AT2G03370 381 / 4e-129 Glycosyltransferase family 61 protein (.1) Lus10031058 [exp] 236 / 1e-67 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10036003 [exp] 226 / 3e-67 AT3G18180 360 / 2e-119 Glycosyltransferase family 61 protein (.1) Lus10016707 [exp] 225 / 6e-67 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048500 [exp] 602 / 0 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.016G057000 [exp] 602 / 0 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 278 / 8e-88 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 270 / 1e-84 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 266 / 2e-83 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2) Potri.012G051500 [exp] 247 / 8e-75 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.015G042300 [exp] 243 / 2e-73 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 241 / 3e-73 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10018048 pacid=23147990 polypeptide=Lus10018048 locus=Lus10018048.g ID=Lus10018048.BGIv1.0 annot-version=v1.0 ATGGGGTTGCACCAGCATCGTCTCAAGAATCACCACCACCTCCAGCAGCAGCCGTTGTTAGAAGACGATGTGGAGATTAATGGCGGCGGCGGAGGAGGAA TTTTAGTTGTGTTTGCAAAGAGACAACAAACATTAGCAAATGCAACGACTAGACCGAAGCTTCTTTCCCTCCTCTTCCTTTCCCTCCTCTCTTGCTTCCT CATCCTCGCCCCTCACTTCTTCCCTTCCTTCTATTCACTCGATTCTCTTTCAAATATGGACTCCGCTGTCCCTCTTTGCTCTTCTGTCCCCAACGGAACC ATTTGCTGTGACAGAATCAGCAGCATCCGTACAGACGTCTGCGTAATGAAGGGAGACATCCGAACCCAATCCTCCACTTCCTCCATCTTCCTCTTCGGAT CCAAAACCCAGCACGAAAAGATCAGACCTTACACTCGAAAATGGGAGGCCAGTGTGATGAACACCATTGACGAGCTCCACCTCATCTCCCAGCCAGCCGC CGGTCAACTACAACAACAACAACAAGAACGCTACCGCCGCCGTTGTGACGTCACCCACGACGTACCGGCGGTGGTCTTCTCCACGGGAGGGTACACGGGG AATGTCTACCACGAATTCAACGACGGACTCATCCCTCTCTACATCACATCCCAGCATTTCAACAAACAGGTTGTGTTTGTCATCTTGGAGTACCACAACT GGTGGATCACCAAATACTCAGACGTCCTCTCCCAGCTCACGGACTACCCGGCAATCGATTTTACGGAGGACAAGAGGACGCATTGCTTCCCTGAAGCCGT CGTGGGTCTTAGGATCCACGACGAGCTCACCGTTAATCCCGCCATGATGATCCAGGGTGAGACCGGGACCAACAAGTCCATGGTCGATTTTCGTCAGGTT CTTGATCGAGCCTATTGGCCTCGTATCAAGGGCCTAATAGACGACGAGCAACGAGAGGTTGGAGATAGAAATACTTTGTTGTCTCTATCCCCGCCATCTC GAATAGCGAATGTTCCGAAATTGGTGATTGTTTCTCGAACCGGTTCGCGAGCGATCACCAACGAGGAGTTGCTGGTGAAACTAGCGGAGAGGATCGGGTT TCAAGTGGAGGTGCTTCGACCCAACCCGACCACCGAGTTGGCGAAGATATATCGGGCGTTGAATTCGAGTGACGTGATGATCGGGGTCCACGGGGCGGCG ATGACTCATTTCATGTTCATGAAGCCCGGGTGTGTTTTTATTCAGGTGATTCCGTTGGGGACGGAGTGGGCCGCGGGTAGCTATTACGGCGACCCGGCTA GGAAGATGGGTCTGAAGTACATTGGATACAAAATCCTCCCGAGGGAGAGCTCGTTGTACGAGAAGTACGACGAGCACGATGCAGTTCTACGGGACCCAGA GCGGGTTTCGCAAAGAGGTTGGGAGATTACGAAGTCGATATATCTGGACGGGCAGAATGTGGTACTGGATTTGAAGAGGTTTCGGAAGCGGCTATGGAGA GCTTATGGTTATGCAATTGGTAATGTTATGAGGAATCATCAGCAACAAGAATCTCAATGA
AA sequence Show only first row Show all	>Lus10018048 pacid=23147990 polypeptide=Lus10018048 locus=Lus10018048.g ID=Lus10018048.BGIv1.0 annot-version=v1.0 MGLHQHRLKNHHHLQQQPLLEDDVEINGGGGGGILVVFAKRQQTLANATTRPKLLSLLFLSLLSCFLILAPHFFPSFYSLDSLSNMDSAVPLCSSVPNGT ICCDRISSIRTDVCVMKGDIRTQSSTSSIFLFGSKTQHEKIRPYTRKWEASVMNTIDELHLISQPAAGQLQQQQQERYRRRCDVTHDVPAVVFSTGGYTG NVYHEFNDGLIPLYITSQHFNKQVVFVILEYHNWWITKYSDVLSQLTDYPAIDFTEDKRTHCFPEAVVGLRIHDELTVNPAMMIQGETGTNKSMVDFRQV LDRAYWPRIKGLIDDEQREVGDRNTLLSLSPPSRIANVPKLVIVSRTGSRAITNEELLVKLAERIGFQVEVLRPNPTTELAKIYRALNSSDVMIGVHGAA MTHFMFMKPGCVFIQVIPLGTEWAAGSYYGDPARKMGLKYIGYKILPRESSLYEKYDEHDAVLRDPERVSQRGWEITKSIYLDGQNVVLDLKRFRKRLWR AYGYAIGNVMRNHQQQESQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41640			Glycosyltransferase family 61 ...		Lus10018048 [exp]	0	1
AT1G35780			unknown protein		Lus10020921 [exp]	1.7	0.8763
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10017217 [exp]	5.9	0.8338
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10015226 [exp]	7.4	0.8376
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10028511 [exp]	8.0	0.8252
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10027336 [exp]	10.4	0.8349
AT3G07210			unknown protein		Lus10025908 [exp]	11.1	0.8504
AT3G18060			transducin family protein / WD...		Lus10027252 [exp]	11.2	0.8047
AT3G54400			Eukaryotic aspartyl protease f...		Lus10039503 [exp]	13.8	0.7907
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10038278 [exp]	14.9	0.8075
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	15.6	0.8162

Compare expression of checked genes

Lus10018048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.