Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10310 868 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 626 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 617 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G09170 531 / 7e-173 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 506 / 4e-162 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT1G73860 498 / 9e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G18410 478 / 7e-151 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 471 / 3e-149 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT5G41310 458 / 2e-145 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27550 314 / 1e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042045 [exp] 1905 / 0 AT3G10310 863 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10031058 [exp] 1316 / 0 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10035442 [exp] 1268 / 0 AT3G10310 864 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032897 [exp] 608 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10029865 [exp] 593 / 0 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10015212 [exp] 585 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10001306 [exp] 525 / 5e-170 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10009851 [exp] 489 / 5e-157 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032264 [exp] 474 / 4e-149 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048650 [exp] 751 / 0 AT3G10310 503 / 2e-169 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 630 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 629 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.005G021100 [exp] 625 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 624 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.011G165200 [exp] 508 / 2e-162 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G467600 [exp] 507 / 3e-162 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G104000 [exp] 489 / 9e-156 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 473 / 2e-149 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 457 / 3e-144 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10018049 pacid=23147995 polypeptide=Lus10018049 locus=Lus10018049.g ID=Lus10018049.BGIv1.0 annot-version=v1.0 ATGGAGAGCTCCACCACGGCTGGGTTTTACAATGTCTTGGCTTCAAGAAAAGCCGAGGAAGCTGTTTGGAGGCGTTATCAAGCTACTGAGTGGCTCGAAA GCCTAGTGGGTCCGTTGAGTATACCGAGCCATCCGTCGGAGAAGGAATTCATTTCTCGCTTGAGAAATGGCTTGATTCTTTGCAATGCCATTAACAAAGT CCATCCAGGATCAGTAACTAAGGTTGTGGAGAATCACGTTCCTGTGCAATCCCTAACCCGAGAATCCCAACCATTACCAGCGTATCAGCACTTTGAGAAT GTAAAGAATTTCCTAGTAGCTATGGGAGATTTGAAACTTCCGGCATTTGAAGCTTCTGATCTAGAAAGGGATACATTGGAACTTGAAGCAGGATCAACTG CTAAGGTGGTTGATTCAATCTTGGCTTTGAAGTCATACCATGAGCACAAGAATATGAATGGTAGTAATGGGGCTTTCAAGTCTACAAAATCCCCTATGGT TTCTCACAGTGCGTCGAGGAGAAATCTCCAGGGGTTGTCGTCAGATTCTTGTCGGCGGTTGGAGATGAATGTAGCATCCAAGGGACATCTATCAGGCAAT GCTGACAGTCAGAAACTGGAAGATGAACTGATCAAGGTACTTGCAGAATACATGGCTGATACAAAAGAAAACATGGGTGACTACTTTCTCACCTCTTTCC GAGCTGGGAATGTGGATCCAATGAAGCTATTTGGTAGGATCGTGTCAAGTTGTCTCAAGGACAATCTACATAAGTTTCCTGAGGGCCAGACAGTGGTCAT GGACACCTTGAAAGAGAGTAGTAATTTACCTGCTCATTTGGAAGCGACTCCATTGGATGACATATCTGAACGCAGAAATAGTAAGTGTTGTCGAACATGC TTAAGGAAAGGCAACTGCAATCACAGGCGTTTACTGCAAGTCCAGGAAAGAGAACTCCAGAACCTGAAGACCTTGTTAACTACAACAAGGAAAGAGTTTG AAGGCTTGCAATTCCAGTTGCAGAACGATCTGACACAGTGCGGCATTCAGGTTCAGGAGATGTCTAGAGCTGCTCAAGGATATCACAAAGTGTTGAAAGA AAACAGAATTTTGTACAACATGGTTCAGGATTTGAAAGGAAATATTCGAGTTTATTGTAGAGTAAGACCTTCTTTCACCGCTGGAGCAAGCAATGGAGTA GAATTTGTTGGAGAGGATGGCTCACTGGTGATTGTAGATCCATCAAAGCCCACGAAAGATGGAAGGAGACATTTTCAGTTCAACCAGGTTTTTGGTCCTA CCGCCACCCAAGAAAATGTGTTTGAACATGTCCAACCCCTAATCAGATCAGTGATGGATGGCCACAATGTATGCATTTTTGCTTATGGCCAAACCGGCTC TGGTAAAACATACACAATGAGTGGTCCATCAGGTGGATCAACCAAGGAGCTGGGGATAAATTACCTGGCCCTCACTGACCTTTTCCAGATGTCTGATAGA AGAAAAGATGTCGTAAACTATGATATACAAGTTCAGATGGTGGAGATATACAATGAGCAAATACGGGACCTTCTTGCTGAGGATTCGTCAGCCACCAAAT ATCCTTTTAAGCTTTCAGTTACTAGTTGTGCTGGGGATGATGGTCTAACTCTTCCGGATGCTACGTTGCTCCCTGTGACATCTACTTCTGATGTTCTTAA TTTGATGAAACTTGGTGAGGTGAATCGTGTTTTCAGTTCTACTGCAATGAATAATAGAAGCAGTCGTTCCCACAGTGTCCTGACAGTTCACGTGCATGGC AAAGAAGAGTCCGGAGCTAATCTCCGTGGCTGCCTGCATTTGGTGGACTTAGCCGGAAGCGAAAGAGTTGACAAATCGGAAGTTACCGGGGATAGGTTCA AGGAGGCAACATATATTAACAAATCTCTTTCATGCCTAGGGGACGTGGTCACAGCATTGGCACATAAGAATTCTTACATTCCATACAGAAACAGCAAACT CACACTTCTGCTCCAAGATTCCTTAGGTGGGCATGCTAAAACACTGATGTTTGCTCATGTGAGCCCAGAAGAAGACTTCTCATCAGAGACTGTCACCACC TTGAAGTTTGCTCAGCGGGTATCCAGCGTTGAACTTGGCGCGGCTTGTGCTAACAAAGAGAGCAGCGAGATCATGCAATTGAAGGAACAGGTTGAGAACC TCAAAAGGGCCATGACTAATAAACAGTCATCTAATGAAGCAAGATCTCCACTTGGGAAATCAAATGCAGGTGCAAGAACACCGCCACGGTCAAGGAGACT CAGTATTGAGAACATCAGCAGCAACACTAAGCTGACCAAGACCACAAACCATGATGACAGGAAGGCATTGAAGACTCCTCCATTGCCTACTCGTTCTCGA AGGCTAAGTTTGGAAGCTCCAACGTACAGTAAAAGGGATGATGATTTCTTGACAAAAAAAGCAGATGATGAAACAATAAGAAAGCCCCTTCGGTTTGAAC GGACACCAAAGAAGAACAACCATTCACAGGATGTAGAAGCCACACCAAAGAAGAAGAACCATTCTGCAAAGATTAGCAGCTATTCGTCTTACCAACGCAC TCCTCCTAGAAGTCCTACTAGTTCCTCATATCAAAGGCAAACACAAATTCCTTACCTTCAGTTGCCATTAGCCACAGAAAACCAAGTGGTTGCGAGAAAT GAAGTTCAGAATCTGATGCGAAGTCAAGTTGTCAGTTCTGCAACGGGCCGTGTTAATGGGAAAGGGTCTCAGATAAGGAAGTCGCTTCGGACCATAGGAA AGCTGATTAACGGATCTGAAAAGAGGAAACAACGGAAAGAACAGTCTCAAGCCAATTTGAAGAGTTTGAATGAAGAAATCAAGTCACCAGTACGGAGTAG CATCAAAAGGGCAGCAAGGAGGCAATCACTCACTGGAGTTTACAAGTCAGTTGACTTAGATGACTCGAGAAGGAATGCAAAGACACCTCCTCCTGCTGGC CATACGCCTAACAAAAGATGGATGTAG
AA sequence Show only first row Show all	>Lus10018049 pacid=23147995 polypeptide=Lus10018049 locus=Lus10018049.g ID=Lus10018049.BGIv1.0 annot-version=v1.0 MESSTTAGFYNVLASRKAEEAVWRRYQATEWLESLVGPLSIPSHPSEKEFISRLRNGLILCNAINKVHPGSVTKVVENHVPVQSLTRESQPLPAYQHFEN VKNFLVAMGDLKLPAFEASDLERDTLELEAGSTAKVVDSILALKSYHEHKNMNGSNGAFKSTKSPMVSHSASRRNLQGLSSDSCRRLEMNVASKGHLSGN ADSQKLEDELIKVLAEYMADTKENMGDYFLTSFRAGNVDPMKLFGRIVSSCLKDNLHKFPEGQTVVMDTLKESSNLPAHLEATPLDDISERRNSKCCRTC LRKGNCNHRRLLQVQERELQNLKTLLTTTRKEFEGLQFQLQNDLTQCGIQVQEMSRAAQGYHKVLKENRILYNMVQDLKGNIRVYCRVRPSFTAGASNGV EFVGEDGSLVIVDPSKPTKDGRRHFQFNQVFGPTATQENVFEHVQPLIRSVMDGHNVCIFAYGQTGSGKTYTMSGPSGGSTKELGINYLALTDLFQMSDR RKDVVNYDIQVQMVEIYNEQIRDLLAEDSSATKYPFKLSVTSCAGDDGLTLPDATLLPVTSTSDVLNLMKLGEVNRVFSSTAMNNRSSRSHSVLTVHVHG KEESGANLRGCLHLVDLAGSERVDKSEVTGDRFKEATYINKSLSCLGDVVTALAHKNSYIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEEDFSSETVTT LKFAQRVSSVELGAACANKESSEIMQLKEQVENLKRAMTNKQSSNEARSPLGKSNAGARTPPRSRRLSIENISSNTKLTKTTNHDDRKALKTPPLPTRSR RLSLEAPTYSKRDDDFLTKKADDETIRKPLRFERTPKKNNHSQDVEATPKKKNHSAKISSYSSYQRTPPRSPTSSSYQRQTQIPYLQLPLATENQVVARN EVQNLMRSQVVSSATGRVNGKGSQIRKSLRTIGKLINGSEKRKQRKEQSQANLKSLNEEIKSPVRSSIKRAARRQSLTGVYKSVDLDDSRRNAKTPPPAG HTPNKRWM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10018049 [exp]	0	1
AT2G26760		CYCB1;4, CYC3	Cyclin B1;4 (.1)		Lus10036080 [exp]	3.2	0.9467
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	5.6	0.9493
AT5G04320			Shugoshin C terminus (.1.2)		Lus10021420 [exp]	9.2	0.9406
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	10.5	0.9434
AT1G63640			P-loop nucleoside triphosphate...		Lus10032264 [exp]	11.8	0.9290
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10027933 [exp]	12.5	0.9386
AT3G10310			P-loop nucleoside triphosphate...		Lus10042045 [exp]	16.4	0.9431
AT5G65120			unknown protein		Lus10016802 [exp]	18.7	0.9112
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	19.0	0.9111
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Lus10023401 [exp]	20.6	0.9316

Compare expression of checked genes

Lus10018049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.