Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41660 171 / 9e-52 MIZ1 mizu-kussei 1, Protein of unknown function, DUF617 (.1) AT3G25640 145 / 5e-42 Protein of unknown function, DUF617 (.1) AT5G42680 132 / 4e-37 Protein of unknown function, DUF617 (.1.2) AT5G06990 130 / 3e-36 Protein of unknown function, DUF617 (.1) AT2G37880 123 / 8e-34 Protein of unknown function, DUF617 (.1) AT5G23100 123 / 2e-33 Protein of unknown function, DUF617 (.1) AT4G39610 120 / 2e-32 Protein of unknown function, DUF617 (.1) AT1G21050 119 / 2e-32 Protein of unknown function, DUF617 (.1) AT2G21990 118 / 1e-31 Protein of unknown function, DUF617 (.1) AT1G76610 115 / 4e-31 Protein of unknown function, DUF617 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042046 [exp] 403 / 4e-143 AT2G41660 170 / 3e-51 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10035443 [exp] 177 / 7e-54 AT2G41660 248 / 4e-81 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10031059 [exp] 177 / 9e-54 AT2G41660 258 / 4e-85 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Lus10000863 [exp] 137 / 9e-39 AT5G23100 276 / 3e-93 Protein of unknown function, DUF617 (.1) Lus10027241 [exp] 132 / 5e-37 AT5G23100 270 / 1e-90 Protein of unknown function, DUF617 (.1) Lus10021759 [exp] 132 / 5e-37 AT5G42680 254 / 3e-85 Protein of unknown function, DUF617 (.1.2) Lus10019166 [exp] 132 / 1e-36 AT3G25640 258 / 2e-86 Protein of unknown function, DUF617 (.1) Lus10034386 [exp] 129 / 2e-35 AT3G25640 268 / 3e-90 Protein of unknown function, DUF617 (.1) Lus10035847 [exp] 126 / 4e-34 AT2G21990 306 / 1e-104 Protein of unknown function, DUF617 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G048800 [exp] 169 / 3e-51 AT2G41660 241 / 3e-79 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.016G056800 [exp] 163 / 4e-49 AT2G41660 202 / 6e-64 mizu-kussei 1, Protein of unknown function, DUF617 (.1) Potri.001G031900 [exp] 146 / 2e-42 AT5G06990 275 / 6e-93 Protein of unknown function, DUF617 (.1) Potri.015G053000 [exp] 142 / 3e-41 AT5G23100 293 / 3e-100 Protein of unknown function, DUF617 (.1) Potri.012G058300 [exp] 142 / 6e-41 AT5G23100 261 / 7e-88 Protein of unknown function, DUF617 (.1) Potri.010G131600 [exp] 141 / 1e-40 AT3G25640 249 / 1e-82 Protein of unknown function, DUF617 (.1) Potri.014G035000 [exp] 136 / 5e-39 AT5G42680 286 / 2e-98 Protein of unknown function, DUF617 (.1.2) Potri.003G193700 [exp] 136 / 1e-38 AT5G06990 328 / 6e-114 Protein of unknown function, DUF617 (.1) Potri.002G128800 [exp] 135 / 2e-38 AT5G42680 269 / 2e-91 Protein of unknown function, DUF617 (.1.2) Potri.005G084000 [exp] 134 / 8e-38 AT2G21990 327 / 4e-114 Protein of unknown function, DUF617 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04759 [flax] [poplar] DUF617 Protein of unknown function, DUF617
Representative CDS sequence Show only first row Show all	>Lus10018050 pacid=23147988 polypeptide=Lus10018050 locus=Lus10018050.g ID=Lus10018050.BGIv1.0 annot-version=v1.0 ATGTATACCTACTGGCCGGCGGCGGTACGAGTGGAGAGAGACAGCAGCCGGAGATCATCAACATCAAGCGGAAGGATCACCCCATCATCCCCATATTCAA ACTACTACTACAATAGTACCACACTGACCACCCCCAGAACCTCCTCCTTCTCCGACCAACAATATTATCACCACCACCGCCACCTCATCATCCCATCTGA CCAAAACAACAAGAAAGTCAAAGTCAACGTATACATGAAGAAATCCGTCTCCTTTCTCCGCACAATATTCCTCAACTTCCTTTCTCCACCAAACTCCATC CAACAACAACAAATCATGATCTTGCCCCTCAAGAAGGTGGCGACGACGACGTGTACTCTCTTCGGCTACCGCAGGGGACACGTCAGCTTCGCCGTCCACC TCTACGATCCCAAGACCACCACTTCTGACCCGATCCTCCTCCTCCAGCTCCCCATCTCCACCGCCGCCCTCCTCAACGACATGGCTTCCGGTCTCGTCCG GATCTCCCTCGAGTGCCACACCAAGTCTGATGATGTGCTGATGAAGGAGCCTGCGTGGAGTATGTACTGCAACGGGAGGAAATGCGGCGGGAAAGCAGTG GCGCGTTGGAGCTACACTGCTCTTGACTCGCACGTGCTAAACACCGTCAGCAGCGTCTCGGTGGGAGCTGGGGTTATTCCTCCTCCTCCCATGTGTGCGG GTGGTGGTGAGTTGTTGTATATGAGGGCTAAGTTTGAGCGGGTTGTTGCCGGGAGTCGTGATTCGGAGGCTTTTCACATGTTGAACCCTGACCGTAGGAT CTGTACCGGGTCAGGACCTGAACTCAGCCTCTTCTTCCTCCGCTTTTGA
AA sequence Show only first row Show all	>Lus10018050 pacid=23147988 polypeptide=Lus10018050 locus=Lus10018050.g ID=Lus10018050.BGIv1.0 annot-version=v1.0 MYTYWPAAVRVERDSSRRSSTSSGRITPSSPYSNYYYNSTTLTTPRTSSFSDQQYYHHHRHLIIPSDQNNKKVKVNVYMKKSVSFLRTIFLNFLSPPNSI QQQQIMILPLKKVATTTCTLFGYRRGHVSFAVHLYDPKTTTSDPILLLQLPISTAALLNDMASGLVRISLECHTKSDDVLMKEPAWSMYCNGRKCGGKAV ARWSYTALDSHVLNTVSSVSVGAGVIPPPPMCAGGGELLYMRAKFERVVAGSRDSEAFHMLNPDRRICTGSGPELSLFFLRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10018050 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020331 [exp]	2.4	0.9297
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10013550 [exp]	3.5	0.9198
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	4.9	0.9174
AT2G26450			Plant invertase/pectin methyle...		Lus10002976 [exp]	8.2	0.8164
AT5G03980			SGNH hydrolase-type esterase s...		Lus10009325 [exp]	8.8	0.8878
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	8.9	0.9033
					Lus10001533 [exp]	11.8	0.9019
AT5G48655			RING/U-box superfamily protein...		Lus10022774 [exp]	13.9	0.9000
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10022808 [exp]	14.4	0.8861
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	16.5	0.8979

Compare expression of checked genes

Lus10018050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.