Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41680 782 / 0 NTRC NADPH-dependent thioredoxin reductase C (.1) AT2G17420 317 / 4e-105 NTR2, ATNTRA, NTRA NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) AT4G35460 308 / 1e-101 ATNTRB, TRB1, NTR1 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 1, NADPH-dependent thioredoxin reductase B (.1) AT3G51030 40 / 0.0005 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1) AT3G09940 42 / 0.0007 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042048 [exp] 870 / 0 AT2G41680 840 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10006853 [exp] 310 / 5e-97 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10025845 [exp] 268 / 2e-87 AT2G17420 437 / 7e-155 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10038256 [exp] 252 / 2e-81 AT2G17420 442 / 1e-157 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10037596 [exp] 129 / 1e-35 AT2G17420 241 / 2e-80 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10019550 [exp] 119 / 5e-32 AT2G17420 202 / 5e-65 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10038255 [exp] 56 / 3e-09 ND 115 / 7e-32 Lus10014277 [exp] 42 / 0.0002 AT3G51030 185 / 4e-62 ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, thioredoxin H-type 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G049100 [exp] 802 / 0 AT2G41680 785 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Potri.001G456800 [exp] 318 / 2e-105 AT2G17420 582 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.011G145100 [exp] 313 / 9e-104 AT2G17420 568 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10018051 pacid=23147897 polypeptide=Lus10018051 locus=Lus10018051.g ID=Lus10018051.BGIv1.0 annot-version=v1.0 ATGGTTGATCCTGCAGTGAGAGGTGTTGAGAATGTGGTAATCATAGGTTCCGGTCCAGCTGGATACACGGCAGCAATTTATGCGGCTCGTGCGAATTTGA AGCCTGTGGTTTTCGAAGGTTATCAGGCAGGTGGTGTCCCTGGTGGCCAGTTGATGACTACGACTGAAGTGGAGAACTTCCCTGGTTTCCCTGATGGAGT TACAGGTCCAGATTTGATGGAAAGGATGCGGAAGCAAGCCGAGCGTTGGGGTGCCGAACTGTTCCAGGAAGATGTTGAATCTCTTGACGTTAAGAGCCAT CCTTTTGTTGTGGAGAGTGGTGAGCGTAAGGTTAAATGCCATAGCATCATTTACGCCACTGGGGCTACCGCGAAAAGGCTCAAATTACCTCGTGAGGAAG AGTTTTGGAGTAGAGGAATTAGTGCTTGTGCAATTTGTGATGGGGCATCTCCACTGTTTAAGGGGCAGGTTCTAGCTGTTGTTGGAGGAGGTGATACAGC TACAGAGGAAGCAATATACTTAACAAAATATGCTCGCCATGTTCATCTACTTGTACGTAGAGACCAACTCAGAGCATCAAGAGCAATGCAGGATAGAGTG GTCAACAATCCAAACATCACTGTGCACTACAATACAGAGACTGTGGATGTGGTTAGCAATACAAAGGGTCAGATGTCCGGTATTTTGACAAGAAAAACGG ATACGGGCGAGGAAACCGTTATCGAGGCAAAAGGCTTATTTTATGGAATCGGGCATTCACCAAATAGCCAACTGTTGAAAGGGCAAGTTGAACTTGACAG CACAGGCTATGTATTGGTTCAGGAGGGTTCTGCAAACACATCAGTGGAAGGTGTTTTCGCGGCTGGGGATGTACAGGATCATGAGTGGAGGCAAGCAGTC ACCGCCGCTGGATCGGGATGCATTGCAGCTTTATCAGCGGAAAGATATCTTGTGAGCAATAATCTGCTAATAGAGTTCCACCAGCCTCAAACTGAAGAGG TTAAGAAGGAACTGAGCGACAGGGACGTTCAGCAGGGCTTTGACATTACCCGTACGAAGCATAAGGGCCAGTACGCTCTAAGGAAGTTGTATCATGAAAG TCCAAGGCTGATATGTGTATTATACACGGCACCAACTTGCGGTCCATGTAGAACTTTAAAGCCAATTCTTAGCAAGGTGATCGATGAATTTGATAAAAAT GTACATTTTGTGGAGATCGACATTGAGGAAGACCAAGAAATAGCAGAAGCTGCTGACATTATGGGGACACCGTGTGTTCAGTTCTTCAAGAACAAAGAGC TACTCAGGAAGGTGCCAGGGGTGAAAATGAAGAAAGAGTATAGAGAATTCATTGAAGCAAATAAATAA
AA sequence Show only first row Show all	>Lus10018051 pacid=23147897 polypeptide=Lus10018051 locus=Lus10018051.g ID=Lus10018051.BGIv1.0 annot-version=v1.0 MVDPAVRGVENVVIIGSGPAGYTAAIYAARANLKPVVFEGYQAGGVPGGQLMTTTEVENFPGFPDGVTGPDLMERMRKQAERWGAELFQEDVESLDVKSH PFVVESGERKVKCHSIIYATGATAKRLKLPREEEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKYARHVHLLVRRDQLRASRAMQDRV VNNPNITVHYNTETVDVVSNTKGQMSGILTRKTDTGEETVIEAKGLFYGIGHSPNSQLLKGQVELDSTGYVLVQEGSANTSVEGVFAAGDVQDHEWRQAV TAAGSGCIAALSAERYLVSNNLLIEFHQPQTEEVKKELSDRDVQQGFDITRTKHKGQYALRKLYHESPRLICVLYTAPTCGPCRTLKPILSKVIDEFDKN VHFVEIDIEEDQEIAEAADIMGTPCVQFFKNKELLRKVPGVKMKKEYREFIEANK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10018051 [exp]	0	1
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10004326 [exp]	2.2	0.8841
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015113 [exp]	4.0	0.8687
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043197 [exp]	4.9	0.8519
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10042048 [exp]	4.9	0.8622
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10005688 [exp]	5.3	0.8464
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	13.0	0.8414
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Lus10007512 [exp]	17.0	0.8024
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10020304 [exp]	18.8	0.8485
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10028565 [exp]	22.4	0.8399
AT3G25410			Sodium Bile acid symporter fam...		Lus10038237 [exp]	24.7	0.8497

Compare expression of checked genes

Lus10018051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.