Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34700 150 / 1e-46 CIB22, AtCIB22 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042049 [exp] 177 / 1e-57 AT4G34700 195 / 4e-66 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1) Lus10031084 [exp] 174 / 3e-56 AT4G34700 176 / 1e-58 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1) Lus10035469 [exp] 172 / 2e-54 AT4G34700 176 / 2e-57 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G124600 [exp] 167 / 1e-53 AT4G34700 171 / 9e-57 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1) Potri.004G163000 [exp] 166 / 3e-53 AT4G34700 174 / 1e-57 B22 subunit of eukaryotic mitochondrial Complex I, LYR family of Fe/S cluster biogenesis protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018052 pacid=23147971 polypeptide=Lus10018052 locus=Lus10018052.g ID=Lus10018052.BGIv1.0 annot-version=v1.0 ATGAATTTGGCGTCAACGGCGGCTTACGCTGCTCGGCGGGCTGCACAAAGGGAGCGTGTTCGGATCCTTTACCGCCGGGCTCTCAAGGACACTCTCAACT GGGCAGTCCACCGACACCTCTTCTATGAAGATGCTGACAATCTTCGCGCCAGGTTTGAGGTGAACAAAGGAGTGGAGGATCTGGACACAATTGATAGGCT CCTTGTTGATGGCGAGGCACAATACAACAAGTGGCGGCACCCTGATCCTTACATTGTTCCATGGGCTCCTGGTGGTTCTAAGTTCACTCGAAATCCGACT CCGCCAGAAGGGATAGCGGGGATCCATATGATGCTTGGAGAAAGCAGTGACCCTGATCTGTCTCCTGTTTGGTTTATTCATTTGAAGGCAGAGATGGTAG AAACCCATGTTCAGTACTGTTTTAGTGCAGCTCTGTATTTGCTCTCGTGTCCGATAACCTTAATGTGTGTTTTGGGATCATGGTTGAACGAAATGACAGA AAGGGGACCTGCGAGTGGTTCTGTGTTTGCTTATTCTGTTACAAATCTGACAAACATCAGTGACCAATGTTTGTTCCCTAGAGAGGGGACTCCCTACAAC CAATGTCATTACAAGAGAAAGTAA
AA sequence Show only first row Show all	>Lus10018052 pacid=23147971 polypeptide=Lus10018052 locus=Lus10018052.g ID=Lus10018052.BGIv1.0 annot-version=v1.0 MNLASTAAYAARRAAQRERVRILYRRALKDTLNWAVHRHLFYEDADNLRARFEVNKGVEDLDTIDRLLVDGEAQYNKWRHPDPYIVPWAPGGSKFTRNPT PPEGIAGIHMMLGESSDPDLSPVWFIHLKAEMVETHVQYCFSAALYLLSCPITLMCVLGSWLNEMTERGPASGSVFAYSVTNLTNISDQCLFPREGTPYN QCHYKRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10018052 [exp]	0	1
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10042049 [exp]	2.2	0.8950
AT2G22170			Lipase/lipooxygenase, PLAT/LH2...		Lus10037491 [exp]	6.6	0.8358
AT1G76200			unknown protein		Lus10034571 [exp]	6.7	0.8513
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	6.8	0.8754
AT2G38130		ATMAK3	Acyl-CoA N-acyltransferases (N...		Lus10041514 [exp]	11.7	0.8387
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	13.1	0.8688
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	13.4	0.8585
AT4G21105			cytochrome-c oxidases;electron...		Lus10006276 [exp]	13.5	0.8090
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10017404 [exp]	15.0	0.8607
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10010351 [exp]	16.1	0.8074

Compare expression of checked genes

Lus10018052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.