Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17990 446 / 2e-155 PAT1, TRP1 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042050 [exp] 516 / 0 AT5G17990 501 / 6e-176 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G082700 [exp] 458 / 3e-160 AT5G17990 538 / 0.0 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1) Potri.015G078801 [exp] 72 / 9e-15 AT5G17990 83 / 3e-19 PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, tryptophan biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00591 [flax] [poplar] Glycos_transf_3 Glycosyl transferase family, a/b domain PF02885 [flax] [poplar] Glycos_trans_3N Glycosyl transferase family, helical bundle domain
Representative CDS sequence Show only first row Show all	>Lus10018054 pacid=23147968 polypeptide=Lus10018054 locus=Lus10018054.g ID=Lus10018054.BGIv1.0 annot-version=v1.0 ATGGCTACTGCAAGGCTCATACAGTTAGACACCATCTCCGAGCTCTCTTATTTACTTGGAGAGGCACTGTTTCTGTATTCGGGAAGCACAGTGATCGAGT CTTTGATTAATGGGGTTAATTTAACGGAGTCTGAGGCCGAGGCATCGCTACATTTCTTGCTCGGTGATGCTAGTGAGGCTTTGATAAGTGCTTTTCTTGT CTTGATGAGAGCCAAAGGAGAGACCTTTGAAGAGATTGTGGGACTGGCAAAGGCCATGCTCAGCCATGCTGAGAAGGTTCAAGGGTTGGATGATGCAGTC GATATTGTTGGAACCGGTGGGGATGGAGCCAACACTGTCAATATTTCTACTGGAGCTTCGATACTCGCTGCTGCTTGTGGTGCAAAGGTGGCCAAGCAAG GCAGTCGTTCAAGTTCATCTGCATGTGGGAGTGCTGATGTATTAGAAGCTTTGGGGGTGGTGATTGACTTGGGTCCAGAGGGAGTGTCAAGGTGTGTGAA TGAAGTAGGAATTGGTTTCATGATGGCCCCAAGATACCACCCTGCTATGAAGGTTGTCCGTCCTGTAAGAAAAAAGCTTAAAGTGAAGACAGTATTCAAT ATATTAGGCCCAATGCTGAATCCTGCAAGAGTACCTTACGCTGTTGTTGGTGTCTTTAATGAAGAACTGGTCCAGAAAATGGCTGGAGCTCTTCAACGTT TTGGAATGAAGAGAGCATTAGTAGTTCATTCGGAGGGCTTGGATGAAATAAGTCCTCTTGGTCCTGGTACAATCCTTGATGTAACTCAACATGGAGTCGA AAAATTCTCATTTGACCCCTTGGAGTTTGGGATTCCCCGGTGCAGTTTGGAAGATTTGCGAGGTGGAGGCCCAGACTACAATGCGGATGCACTGAAGCGT GTATTATCAGGAGAGAAAGGGGCCATTGCAGATGCACTTATCTTAAATGCAGCAGCGTCCCTACTAGTAAGTGGCAAGGTTAAGTCTTTGAGGGAAGGAG TTGATCTGGCTCGAGAAACACAAGTATCTGGAAAAGCTATGCAGACGCTTAACAACTGGATACGAATTTCTAACCTCGCCGATGGTGTTGAATTCCAGCT CCTCTTCCTGAACCCCAGACTTACCCGCAATAAGATCATCAATGGCGATCCAAAATGTTCCAACGTGGGGAGTAACTCACTTCAATGCTCCGAGAATTGG ACCACGAAAGACGATGCCAACCTGGGGACTGCTAGCTTCTTCAACCATTGTATGGAGCCATTTTGGCTAGTTTAG
AA sequence Show only first row Show all	>Lus10018054 pacid=23147968 polypeptide=Lus10018054 locus=Lus10018054.g ID=Lus10018054.BGIv1.0 annot-version=v1.0 MATARLIQLDTISELSYLLGEALFLYSGSTVIESLINGVNLTESEAEASLHFLLGDASEALISAFLVLMRAKGETFEEIVGLAKAMLSHAEKVQGLDDAV DIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLGPEGVSRCVNEVGIGFMMAPRYHPAMKVVRPVRKKLKVKTVFN ILGPMLNPARVPYAVVGVFNEELVQKMAGALQRFGMKRALVVHSEGLDEISPLGPGTILDVTQHGVEKFSFDPLEFGIPRCSLEDLRGGGPDYNADALKR VLSGEKGAIADALILNAAASLLVSGKVKSLREGVDLARETQVSGKAMQTLNNWIRISNLADGVEFQLLFLNPRLTRNKIINGDPKCSNVGSNSLQCSENW TTKDDANLGTASFFNHCMEPFWLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Lus10018054 [exp]	0	1
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10039049 [exp]	2.4	0.9165
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10023283 [exp]	5.7	0.8929
AT3G06730		TRXz, TRXP ,TRX...	thioredoxin putative plastidic...		Lus10039499 [exp]	13.7	0.8871
AT3G54210			Ribosomal protein L17 family p...		Lus10000382 [exp]	14.2	0.8955
AT4G36390			Methylthiotransferase (.1)		Lus10041793 [exp]	17.8	0.8833
AT3G25660			Amidase family protein (.1)		Lus10007361 [exp]	22.0	0.8852
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10001450 [exp]	23.4	0.8800
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10010748 [exp]	29.7	0.8358
AT3G15190			chloroplast 30S ribosomal prot...		Lus10041925 [exp]	29.7	0.8778
AT4G21770			Pseudouridine synthase family ...		Lus10018352 [exp]	30.0	0.8543

Compare expression of checked genes

Lus10018054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.