Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14490 134 / 6e-36 FHA SMAD/FHA domain-containing protein (.1) AT3G02400 121 / 2e-30 FHA SMAD/FHA domain-containing protein (.1) AT5G19280 50 / 2e-06 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042052 [exp] 439 / 1e-155 AT3G02400 126 / 3e-33 SMAD/FHA domain-containing protein (.1) Lus10031083 [exp] 147 / 3e-41 AT4G14490 159 / 1e-45 SMAD/FHA domain-containing protein (.1) Lus10041216 [exp] 59 / 2e-09 AT5G19280 608 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10021929 [exp] 56 / 2e-08 AT5G19280 595 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10010521 [exp] 50 / 2e-06 AT5G19280 614 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10034062 [exp] 48 / 6e-06 AT5G19280 549 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Lus10008411 [exp] 43 / 0.0002 AT2G21530 149 / 8e-45 SMAD/FHA domain-containing protein (.1) Lus10001966 [exp] 42 / 0.0004 AT2G21530 152 / 4e-46 SMAD/FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G074900 [exp] 130 / 2e-34 AT4G14490 101 / 1e-23 SMAD/FHA domain-containing protein (.1) Potri.008G149700 [exp] 50 / 1e-06 AT5G19280 644 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2) Potri.010G091500 [exp] 47 / 1e-05 AT5G19280 636 / 0.0 ROOT ATTENUATED GROWTH 1, kinase associated protein phosphatase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10018056 pacid=23147948 polypeptide=Lus10018056 locus=Lus10018056.g ID=Lus10018056.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAAGAGCCTTGGCTGGCGCTGTCAATACTGAAGGGACCTCGGGAGGGACAAACCTTCGAATTCCGCCCTGGATCCACCGTCCGAATCGGCC GAGTCGTCAAGGGAAACACCTTCGCCATCAAAGATGCCGGCATCTCTTCCAAGCACCTTCTTATCAAATCCGAATCCGGCGACAAATGGACCGTCCAGGA CCTCGATTCCTCCAACGGCACCACTCTTAACTCCTCCCCGCTCGCTCCTCTCCAACCTTCCGACCTAAGCGATGGCGACCAGATCAAGCTCGGAGAGGCC ACCTCCATGGCCGTCCAGTTCGTATTCAAAATCCAGAATCCACCGCAGCTACGCAGGTGGCGGAGGGGCCAAGTTAGGGTAACGGAAGAAAAGGAGGCTG ATAATCTGGACCCGATCGATGCATCTGCTGCTGTTGCTGACAACGTTCCGAAGAGAAGAGGGAGGCCGCCAAAACCTAGGGTTCCGGCAGAAAAAGCGGA GGCTCGTGTTACAAGAAGCATGAAGAAGGAAATCGGGGGCTCTGAAGAATCGGGGATTCAATTGGAGAGAAAGCGTCCGGCAACGAGAAGGGGAAAGAAG AATTTGCCAGAAATTCCGATTCCTCATCCGGTTATGGTGGAAATCAAGGAAGAGGAGGTAAGCTTCGTTGAAGAAGCTCGAGAAGGAGGATATGGGAATG GAGGAGTTGTTGACAGTAGTGTTGACAACATAAGACCAAGTGAAGCCATGGTAGGACAAGGAACCGAGATGAGTCAGAAATCGAATAGAGATGAACAAGT GCATGCCCTGCCGACAACGAATGGCCATGGTAATTCAACCGAGCACAGAGGGGAAGAGGGTGAGGGAGAAGTAGAAGACGAATTGGTGGACCTGGAGAAG ATGACTGCCAGGAAGTGGTTCGACTATATGGAAGTGCAGCTCCGAAAGCAAACAATGGAGGCTACGGAGAAGATCATCGACGAAATGAGACAGAAAGCTG AACGAGTGAGAGATTATGTTGCTGAGCAGAAGAGAAACAAGGGTATATCTTAA
AA sequence Show only first row Show all	>Lus10018056 pacid=23147948 polypeptide=Lus10018056 locus=Lus10018056.g ID=Lus10018056.BGIv1.0 annot-version=v1.0 MEEEEPWLALSILKGPREGQTFEFRPGSTVRIGRVVKGNTFAIKDAGISSKHLLIKSESGDKWTVQDLDSSNGTTLNSSPLAPLQPSDLSDGDQIKLGEA TSMAVQFVFKIQNPPQLRRWRRGQVRVTEEKEADNLDPIDASAAVADNVPKRRGRPPKPRVPAEKAEARVTRSMKKEIGGSEESGIQLERKRPATRRGKK NLPEIPIPHPVMVEIKEEEVSFVEEAREGGYGNGGVVDSSVDNIRPSEAMVGQGTEMSQKSNRDEQVHALPTTNGHGNSTEHRGEEGEGEVEDELVDLEK MTARKWFDYMEVQLRKQTMEATEKIIDEMRQKAERVRDYVAEQKRNKGIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02400	FHA		SMAD/FHA domain-containing pro...		Lus10018056 [exp]	0	1
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10003904 [exp]	2.4	0.9582
AT1G09200			Histone superfamily protein (....		Lus10005271 [exp]	5.3	0.9543
AT5G37010			unknown protein		Lus10031372 [exp]	5.7	0.9420
AT5G62710			Leucine-rich repeat protein ki...		Lus10036672 [exp]	6.9	0.9341
AT4G35930			F-box family protein (.1)		Lus10028422 [exp]	6.9	0.9408
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10013465 [exp]	7.3	0.9477
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	7.7	0.9521
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	7.9	0.9531
AT3G57830			Leucine-rich repeat protein ki...		Lus10021022 [exp]	10.9	0.9339
AT5G59690			Histone superfamily protein (....		Lus10014264 [exp]	13.0	0.9446

Compare expression of checked genes

Lus10018056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.