Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21270 448 / 9e-159 UFD1 ubiquitin fusion degradation 1 (.1.2.3) AT4G38930 417 / 6e-147 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT2G29070 363 / 1e-125 Ubiquitin fusion degradation UFD1 family protein (.1.2) AT4G15420 106 / 4e-25 Ubiquitin fusion degradation UFD1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042053 [exp] 484 / 2e-172 AT2G21270 420 / 4e-148 ubiquitin fusion degradation 1 (.1.2.3) Lus10004970 [exp] 318 / 2e-107 AT2G21270 330 / 8e-113 ubiquitin fusion degradation 1 (.1.2.3) Lus10001575 [exp] 237 / 3e-76 AT2G21270 259 / 3e-85 ubiquitin fusion degradation 1 (.1.2.3) Lus10029298 [exp] 188 / 2e-55 AT2G29070 195 / 7e-59 Ubiquitin fusion degradation UFD1 family protein (.1.2) Lus10031538 [exp] 112 / 4e-27 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10015140 [exp] 109 / 5e-26 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163200 [exp] 484 / 7e-173 AT2G21270 487 / 7e-175 ubiquitin fusion degradation 1 (.1.2.3) Potri.009G124900 [exp] 474 / 5e-169 AT2G21270 485 / 4e-174 ubiquitin fusion degradation 1 (.1.2.3) Potri.001G242200 [exp] 375 / 3e-130 AT2G29070 403 / 6e-142 Ubiquitin fusion degradation UFD1 family protein (.1.2) Potri.014G156300 [exp] 107 / 3e-25 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0402 [flax] [poplar] Cdc48_2-like PF03152 [flax] [poplar] UFD1 Ubiquitin fusion degradation protein UFD1
Representative CDS sequence Show only first row Show all	>Lus10018057 pacid=23147911 polypeptide=Lus10018057 locus=Lus10018057.g ID=Lus10018057.BGIv1.0 annot-version=v1.0 ATGGCTGGTTGCTGTAAAGTGCAGAACCTGATTCTAGTGTTCCTCATTTACGTGAACTCGGAAGCTCAACTAGTTTGCTTGCTCCGTCTGCATAATCCCA AAATGTTTTTTGACGGATATGGATATCATGGGACGTCCTTTGAGCAGACGTACCGGTGTTACCCTGCCTCATTTATTGAGAAGCCTCAAATTGAAAGTGG TGATAAAATCATAATGCCTTCTTCAGCACTTGATCGCCTTGCATCCCTGCATATTGATTATCCTATGCTGTTCGAGCTACGAAATGATGCTGCTGAGAGA GTCTCTCATTGCGGGGTTCTCGAGTTCATTGCAGAAGAAGGCATGATCTACATGCCATACTGGATGATGGAGAATCTGCTCTTACAAGAGGGCGATATTG TGCGACTGAAGAATGTGACTCTTCCCAAAGGAACATATGTCAAGTTGCAACCTCATACGAAAGACTTCCTGGATATTACCAACCCAAAAGCCATCTTAGA GACGACATTGAGGAATTATTCTTGCTTGACAACTGGTGACAGTATTATGGTGGCATACAACAACAAAAAGTATTACATAGATATCATAGAATCGAAGCCT GCAAAGGCAATAACCATCATCGAGACTGATTGTGAGGTGGACTTTGCTCCTCCTCTTGATTACAAGGAACCTGAGAGGCCTTCTGCATCTGTTCCCTTAG GCAAGGCTCCGTCTCAAGTTGAAGAGACTCCAGAAGAGACGGTGCCGAAATTCAATCCATTCACAGGAGCAGGGAGACGCTTGGATGGTAAACCATTGCC ATACCAGCCTGCTCCAATATCAGCAGCACCTTCATCAAAAGACAAAAGCCCTGTTGCAGCCAGTAGCAGCAAACAGTCCTCTCCTGCTGCTGGTAGTTCT AGTTCACCGAATACTTCGCGCCAAGCCCAAGGAAAGCTCGTGTTTGGATCGTCAAATGCGAGCCGCGCTCCAAAGGCAACACCGAAGGAAACTGGGAAAG AGCCTAAACAACCAGAGCAGGCAGAAAAGAAAGAGGAACCCAAGTTCCAGGCCTTCTCTGGGAAGAAGTACTCATTGAGGGGTTGA
AA sequence Show only first row Show all	>Lus10018057 pacid=23147911 polypeptide=Lus10018057 locus=Lus10018057.g ID=Lus10018057.BGIv1.0 annot-version=v1.0 MAGCCKVQNLILVFLIYVNSEAQLVCLLRLHNPKMFFDGYGYHGTSFEQTYRCYPASFIEKPQIESGDKIIMPSSALDRLASLHIDYPMLFELRNDAAER VSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRLKNVTLPKGTYVKLQPHTKDFLDITNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIESKP AKAITIIETDCEVDFAPPLDYKEPERPSASVPLGKAPSQVEETPEETVPKFNPFTGAGRRLDGKPLPYQPAPISAAPSSKDKSPVAASSSKQSSPAAGSS SSPNTSRQAQGKLVFGSSNASRAPKATPKETGKEPKQPEQAEKKEEPKFQAFSGKKYSLRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10018057 [exp]	0	1
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	2.2	0.8952
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	3.2	0.8895
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Lus10035872 [exp]	4.2	0.8620
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10003932 [exp]	5.5	0.8870
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	7.7	0.8752
AT5G01010			unknown protein		Lus10029706 [exp]	8.0	0.8655
AT1G04555			unknown protein		Lus10023715 [exp]	11.0	0.8865
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	13.0	0.8595
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10035299 [exp]	13.9	0.8552
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Lus10032557 [exp]	14.1	0.8474

Compare expression of checked genes

Lus10018057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.