Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16530 191 / 3e-60 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) AT1G72590 186 / 1e-58 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT3G43840 39 / 0.0003 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G38050 40 / 0.0006 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042055 [exp] 328 / 9e-115 AT2G16530 347 / 8e-120 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10028371 [exp] 158 / 8e-48 AT2G16530 336 / 4e-115 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10041820 [exp] 142 / 3e-41 AT2G16530 289 / 2e-96 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10021127 [exp] 43 / 4e-05 AT2G38050 256 / 3e-87 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 42 / 0.0001 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G163600 [exp] 202 / 2e-64 AT2G16530 418 / 6e-147 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Potri.009G125200 [exp] 130 / 1e-36 AT2G16530 386 / 7e-134 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Potri.016G110600 [exp] 39 / 0.0008 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF02544 [flax] [poplar] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10018059 pacid=23147945 polypeptide=Lus10018059 locus=Lus10018059.g ID=Lus10018059.BGIv1.0 annot-version=v1.0 ATGCAGAGCTCCCCTTCCTATAAGCTCACGGTTCCTCAAAGATTCTTCTGTCATTTCTACGTGGTGGGCGTGGTTTGGACAACGGTCTTGCTTTCTGCAA CATGGATCTTTGCAAGCAACACGGCAGCACCCATGAGATATGAGTTATGGCTTTCTGTTTTTCTACTTGTGTTGAAGGAAGCTCAAGTCTTGAGAAGGTT TTTCGAGACCATATATGTCTTCAAGTATAGCCCCTCCGCTCGGATGCATATCTTTGGCTACATTACTGGCTTATTCTTCTACACGGCAGCGCCTCTATCA TTATGCTCTCGATATGCGTCCGAGGCGTTCAAGTATGGTGCAGATGTGGGCTCGTTAAGAAGCCAAGGGAAGAAGTTGGATGAGTATGTTATCCCGTGCG GAAATTGGTTTGAACTTGTTTCATCTCCACACTATCTGGCTGAGATTGTTATATATGCTGCTTTTGTGGTTGCTACTGGGAGAAAAGACCTTACTATTTG GCTGCTCTTGGGATTTGTGGTGGCTAATCTGGCCGTAGCAGCTGGAGAACCACATCGGTAG
AA sequence Show only first row Show all	>Lus10018059 pacid=23147945 polypeptide=Lus10018059 locus=Lus10018059.g ID=Lus10018059.BGIv1.0 annot-version=v1.0 MQSSPSYKLTVPQRFFCHFYVVGVVWTTVLLSATWIFASNTAAPMRYELWLSVFLLVLKEAQVLRRFFETIYVFKYSPSARMHIFGYITGLFFYTAAPLS LCSRYASEAFKYGADVGSLRSQGKKLDEYVIPCGNWFELVSSPHYLAEIVIYAAFVVATGRKDLTIWLLLGFVVANLAVAAGEPHR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72590			3-oxo-5-alpha-steroid 4-dehydr...		Lus10018059 [exp]	0	1
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10034358 [exp]	16.7	0.6904
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10016748 [exp]	23.1	0.6653
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10003506 [exp]	26.3	0.6636
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10010732 [exp]	31.6	0.6637
AT1G27170			transmembrane receptors;ATP bi...		Lus10020536 [exp]	59.5	0.6457
AT2G21237			unknown protein		Lus10031077 [exp]	59.8	0.6416
AT3G58520			Ubiquitin carboxyl-terminal hy...		Lus10000847 [exp]	76.4	0.5520
AT4G10260			pfkB-like carbohydrate kinase ...		Lus10040562 [exp]	83.8	0.5673
					Lus10015405 [exp]	123.8	0.5607
					Lus10042417 [exp]	141.1	0.5953

Compare expression of checked genes

Lus10018059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.