Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34740 196 / 7e-61 CIA1, ATASE2, ATPURF2, ATD2 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) AT2G16570 182 / 1e-55 ATASE1, ATASE GLN phosphoribosyl pyrophosphate amidotransferase 1 (.1) AT4G38880 123 / 7e-34 ATASE3 GLN phosphoribosyl pyrophosphate amidotransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018063 [exp] 273 / 4e-96 AT4G34740 195 / 1e-60 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10042058 [exp] 262 / 6e-86 AT4G34740 826 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10035459 [exp] 205 / 2e-64 AT4G34740 837 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125600 [exp] 205 / 3e-64 AT4G34740 882 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Potri.004G164000 [exp] 202 / 3e-63 AT4G34740 891 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018062 pacid=23147960 polypeptide=Lus10018062 locus=Lus10018062.g ID=Lus10018062.BGIv1.0 annot-version=v1.0 ATGCTGAAGGAAGCTGGGGCGAAAGAGGTCCATATGAGGATTGCTAGTCCTCCGATTATAGCTTCGTGTTACTACGGAGTCGATACTCCGAGCTCCGAGG AGCTGATATCGAACAGGATGAGCGTGGAGGAGATTCGGGACTTTATCGGGTGTGATTCGCTAGCGTTCTTGTCGTTCGATAGTTTGAAGAGGTTGCTGAA GGAGGACTCTTCGAATTTCTGCTATGCTTGCTTCTCCGGAGACTACCCGGTGCTGCCACCGAGTGAGGATAAGGTGAAGCGAGTTGGTGACTTTGTGGAT GATGGTTTGAATGGTAGCGTGGACTCCATTGATGGCGGGTGGGTTCAAGGTGTGAAAGTTGAGAAGGAAACGGATGGGGAACAGTCGTTGTCTACTACAT TGGCAAGTTAG
AA sequence Show only first row Show all	>Lus10018062 pacid=23147960 polypeptide=Lus10018062 locus=Lus10018062.g ID=Lus10018062.BGIv1.0 annot-version=v1.0 MLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIRDFIGCDSLAFLSFDSLKRLLKEDSSNFCYACFSGDYPVLPPSEDKVKRVGDFVD DGLNGSVDSIDGGWVQGVKVEKETDGEQSLSTTLAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10018062 [exp]	0	1
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10018063 [exp]	1.0	0.8470
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	10.8	0.7439
AT1G34380			5'-3' exonuclease family prote...		Lus10006622 [exp]	13.3	0.7404
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	23.4	0.7721
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019765 [exp]	27.5	0.7383
AT2G42520			P-loop containing nucleoside t...		Lus10000848 [exp]	28.4	0.7679
AT4G22720			Actin-like ATPase superfamily ...		Lus10013054 [exp]	35.2	0.7386
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10027529 [exp]	40.9	0.7602
AT2G15000			unknown protein		Lus10020971 [exp]	43.1	0.7612
AT4G12130			Glycine cleavage T-protein fam...		Lus10032204 [exp]	48.8	0.7346

Compare expression of checked genes

Lus10018062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.