Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34740 195 / 1e-60 CIA1, ATASE2, ATPURF2, ATD2 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) AT2G16570 182 / 1e-55 ATASE1, ATASE GLN phosphoribosyl pyrophosphate amidotransferase 1 (.1) AT4G38880 122 / 2e-33 ATASE3 GLN phosphoribosyl pyrophosphate amidotransferase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018062 [exp] 273 / 4e-96 AT4G34740 196 / 6e-61 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10042058 [exp] 262 / 5e-86 AT4G34740 826 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Lus10035459 [exp] 204 / 4e-64 AT4G34740 837 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125600 [exp] 207 / 4e-65 AT4G34740 882 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1) Potri.004G164000 [exp] 205 / 3e-64 AT4G34740 891 / 0.0 CHLOROPLAST IMPORT APPARATUS 1, GLN phosphoribosyl pyrophosphate amidotransferase 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018063 pacid=23147906 polypeptide=Lus10018063 locus=Lus10018063.g ID=Lus10018063.BGIv1.0 annot-version=v1.0 ATGCTGAAGGAAGCCGGGGCGAAAGAGGTCCACATGAGGATTGCTAGTCCTCCGATTATAGCTTCGTGTTACTACGGAGTCGATACTCCGAGCTCCGAGG AGCTGATATCGAACAGGATGAGCGTGGAGGAGATTCGGGACTTTATCGGGTGTGATTCGCTAGCGTTCTTGTCGTTCGATAGTTTGAAGAGGTTGCTGAA GGAGGATTCTCCGAATTTCTGCTATGCTTGCTTCTCCGGAGACTACCCGGTGCTGCCGCCGAGTGAGGATAAGGTGAAGCGAGTTGGTGACTTTGTGGAT GATGGTTTGAATGGTAGCGTGGACTCCATTGATGGCGGTTGGGTTCAAGGTGTGAAAGTTGAAAAGGAAACGGATGGGCAACAGTCGTTGTCTACTGCAT TGGCAAGTTAG
AA sequence Show only first row Show all	>Lus10018063 pacid=23147906 polypeptide=Lus10018063 locus=Lus10018063.g ID=Lus10018063.BGIv1.0 annot-version=v1.0 MLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIRDFIGCDSLAFLSFDSLKRLLKEDSPNFCYACFSGDYPVLPPSEDKVKRVGDFVD DGLNGSVDSIDGGWVQGVKVEKETDGQQSLSTALAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10018063 [exp]	0	1
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10018062 [exp]	1.0	0.8470
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	4.7	0.8347
AT3G06200			P-loop containing nucleoside t...		Lus10021947 [exp]	5.7	0.8310
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031121 [exp]	7.9	0.8323
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	18.2	0.8277
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031700 [exp]	18.3	0.7798
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Lus10010027 [exp]	18.4	0.7487
AT2G47840		AtTic20-II	translocon at the inner envelo...		Lus10020219 [exp]	22.4	0.7755
AT5G64670			Ribosomal protein L18e/L15 sup...		Lus10032390 [exp]	22.6	0.8073
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10006374 [exp]	22.6	0.8001

Compare expression of checked genes

Lus10018063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.