Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34730 243 / 9e-82 ribosome-binding factor A family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042060 [exp] 344 / 5e-115 AT4G35910 529 / 0.0 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G164200 [exp] 249 / 5e-84 AT4G34730 266 / 1e-90 ribosome-binding factor A family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0494 [flax] [poplar] DnaA_N PF02033 [flax] [poplar] RBFA Ribosome-binding factor A
Representative CDS sequence Show only first row Show all	>Lus10018065 pacid=23148000 polypeptide=Lus10018065 locus=Lus10018065.g ID=Lus10018065.BGIv1.0 annot-version=v1.0 ATGCTCCAACTACACCTTCACCATCTCCATCTTCGTCCACAGCAGCCGCTCCTTTTCCGCTCTCCAATCTCCTCCACCTGCTTCCTGCCGATTGCAAATG TAAATCCGACGCATCGGCGACCGAAGCCGTTAATCGGAGCTAGAACCGTCCGGTGCATGGCCAGTCCGAGGAGAGTGAAGATGGTGGCGAAGCAGATTCA GAGAGAAATCTCCGACATGCTTTTGACGGATAAGGTCTTGCAGTACGCGATTCTCCCTGAATTTGCCTTGGGAGCTGATAGGTATCTTTCCTCCATTACC ACCATCAGCGACGTTGAAGTCTCCGGCGACTTGCAGGTGGTTAAAGTATATGTATCTGTATTTGGAGACGACAGAGGAAAGGAAGTTGCTCTAGCTGGGT TAAAATCAAAGGCCAAATACGTAAGAGGTCAGTTGGGGAAACGAATGAGGTTGCGTCTGACTCCGGAGGTGCGGTTTCTGGAAGATGAAGCCATCGAGAA AGGAAGCAGGGTACTTGCAATACTAGACAAGATAAAGTCCGAGAAAGAAACTGCCCAAAATAAGAACAAAAACGATCCAGAATCGTCTGGCTCGGCTGAA GATGATGACGATTGGGAGGATGATGATCCTGAAGAAGGGATTATCTATGTAGACTGA
AA sequence Show only first row Show all	>Lus10018065 pacid=23148000 polypeptide=Lus10018065 locus=Lus10018065.g ID=Lus10018065.BGIv1.0 annot-version=v1.0 MLQLHLHHLHLRPQQPLLFRSPISSTCFLPIANVNPTHRRPKPLIGARTVRCMASPRRVKMVAKQIQREISDMLLTDKVLQYAILPEFALGADRYLSSIT TISDVEVSGDLQVVKVYVSVFGDDRGKEVALAGLKSKAKYVRGQLGKRMRLRLTPEVRFLEDEAIEKGSRVLAILDKIKSEKETAQNKNKNDPESSGSAE DDDDWEDDDPEEGIIYVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34730			ribosome-binding factor A fami...		Lus10018065 [exp]	0	1
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042469 [exp]	1.0	0.9138
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	3.5	0.8933
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	3.7	0.9134
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10018210 [exp]	4.2	0.8862
AT5G11480			P-loop containing nucleoside t...		Lus10011673 [exp]	4.6	0.9064
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10011035 [exp]	4.9	0.8904
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027576 [exp]	5.0	0.8961
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	9.9	0.8814
AT5G11480			P-loop containing nucleoside t...		Lus10022126 [exp]	12.0	0.8681
AT3G50685			unknown protein		Lus10014321 [exp]	12.2	0.8539

Compare expression of checked genes

Lus10018065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.