Lus10018066 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35910 487 / 6e-171 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042060 780 / 0 AT4G35910 529 / 0.0 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G051300 537 / 0 AT4G35910 528 / 0.0 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10288 CTU2 Cytoplasmic tRNA 2-thiolation protein 2
Representative CDS sequence
>Lus10018066 pacid=23148011 polypeptide=Lus10018066 locus=Lus10018066.g ID=Lus10018066.BGIv1.0 annot-version=v1.0
ATGGCTTGCGATCCCGCCGGTTGTCAATCCACTTGCTACGAGAACGAACAATTCGTAGAAGAAAACTCGACTCCAGCTCCAACTAGCGGCCACAGCAATG
GTGACCAGCAGCAGGGCATGTGCCTCAAGTGCAAGGTTAACCCCCCAATTCTCAGTGGAGGCGGCGGCGACGACGCGCGCTTCTGCGGGGACTGCTTCAG
GAATAATTTATTCGGGAAGTTTCGCCTTGCTGTTACTTCCCACGCCATGATTACTCCTTCAGACAACGTGCTTGTGGCTTTCTCCGGTGGCGTTGGTTCC
AGGGTGGCTCTGCAATTTGTGCATGATATGCAGCAGAGAGGACAGAAAAACTATGAAGCGAGCAAGGATAGGTCATTGTCCGTCTTTGGTGTTGGAGTGG
CATTTGTTAATGAAAGTGCTGTTCGTTCAATTTCCACGGATAAGGTTGAGGAAGCAATTCAGGAGATGAAATCAACAGTGTCAAAGCTCGCTCCGCCAGT
GAAACAGTTTCATGTTGTTCTACCTGAGAGCATATATTCTTCGAGTTCAAGCGATGACAAAGACAAATTGATGAAGCTACTAGGTGCCGTTGATGATACC
ACTGGGAAGGAGGATCTTTTATTGCATTTGAGGATGTTGGCATTGCAAAAAGTTGCTTCTGAAAATGGATACACTAAACTTGTTCTGGGTTTGTGCACCT
CAAAGCTTGCTTGCCATGTACTTGCTGCAACAGTGAAGGGTCAAGGATATTCTCTATCAGCTGACATACAACATGTTGATGCAAGATGTGAAATCCCTGT
CGTTCGTCCGCTTCGCGACTGTACTGCCCAGGAGCTGAATATTCTTTGCCGTATTGATGGTTTAAAGACGGTGCAGTTGGTTAATGATTCACCCTCTGGC
ATCAATGGTTTGATTTCTTCATTTGTACGCCTGTTGCAGGAAGAGAACCCTTCTCGGGAGTGCACCATAGTCCGAACAGCTGCGAAGCTTACTCCGTTTC
ATTTCAATAGAATCCCAGAGATCAATGATTCGAATGTTCCTTTGGCAATGCGAAGGAGGCAGAAGAGATACAACCTCAAGCCAAATGAATCTATTTCCAC
AGAATCGTTCTGCCCTATATGCAATAGCCCAGTTAACAAGCCAAGCCAAAGCAGCTCGGTAGATTCCCAAATCACAGAGTTTGCTTCGTGCTGCTGTTCA
AGCTGTCAGTTTCAGATGCTGCCTCAAGACCAGTCGTCAATGAAACAATTCTACTCGCTTTTACCAGAAAGAATAGTTTCCCGAGCTAAACGGCAAAGCA
ATGGTAACCTGGACATGCTAAGGTGA
AA sequence
>Lus10018066 pacid=23148011 polypeptide=Lus10018066 locus=Lus10018066.g ID=Lus10018066.BGIv1.0 annot-version=v1.0
MACDPAGCQSTCYENEQFVEENSTPAPTSGHSNGDQQQGMCLKCKVNPPILSGGGGDDARFCGDCFRNNLFGKFRLAVTSHAMITPSDNVLVAFSGGVGS
RVALQFVHDMQQRGQKNYEASKDRSLSVFGVGVAFVNESAVRSISTDKVEEAIQEMKSTVSKLAPPVKQFHVVLPESIYSSSSSDDKDKLMKLLGAVDDT
TGKEDLLLHLRMLALQKVASENGYTKLVLGLCTSKLACHVLAATVKGQGYSLSADIQHVDARCEIPVVRPLRDCTAQELNILCRIDGLKTVQLVNDSPSG
INGLISSFVRLLQEENPSRECTIVRTAAKLTPFHFNRIPEINDSNVPLAMRRRQKRYNLKPNESISTESFCPICNSPVNKPSQSSSVDSQITEFASCCCS
SCQFQMLPQDQSSMKQFYSLLPERIVSRAKRQSNGNLDMLR

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G35910 Adenine nucleotide alpha hydro... Lus10018066 0 1
AT1G42440 unknown protein Lus10030752 2.4 0.9199
AT5G52820 WD-40 repeat family protein / ... Lus10029493 3.5 0.9038
AT2G34357 ARM repeat superfamily protein... Lus10041231 7.1 0.8972
AT4G32520 AtSHMT3, SHM3 serine hydroxymethyltransferas... Lus10005916 7.2 0.9003
AT2G21440 RNA-binding (RRM/RBD/RNP motif... Lus10022044 8.6 0.9078
AT5G52820 WD-40 repeat family protein / ... Lus10039597 8.8 0.8750
AT1G52980 AtNug2 nuclear/nucleolar GTPase 2, GT... Lus10021017 13.4 0.8880
AT1G24090 RNase H family protein (.1) Lus10020869 16.0 0.8832
AT5G17270 Protein prenylyltransferase su... Lus10035305 21.4 0.8653
AT2G24120 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 31... Lus10034355 21.5 0.8646

Lus10018066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.