Plant FIBer expression Database

Lus10018068 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13630 890 / 0 ABAR, CHLH, CCH1, GUN5 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042061
[exp]
169 / 7e-47 AT5G13630 689 / 0.0 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G051100
[exp]
906 / 0 AT5G13630 2528 / 0.0 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02514 CobN-Mg_chel CobN/Magnesium Chelatase
Representative CDS sequence
>Lus10018068 pacid=23147937 polypeptide=Lus10018068 locus=Lus10018068.g ID=Lus10018068.BGIv1.0 annot-version=v1.0
ATGAAGCTGGATGTGCCTTACCTTGTTGCTGTGCCTCTTGTGTTCCAGACTACAGAGGAATGGCTGAATAGTACCTTGGGGCTTCATCCTATTCAAGTGG
CTCTGCAGGTTGCTCTTCCTGAGCTTGATGGTGGTATGGAACCTATTGTCTTTGCCGGCCGCGATCCCAGAACAGGGAAATCACATGCTCTTCACAAGAG
GGTGGAGCAGTTGTGCACTAGAGCAATCAGATGGGGTGAGCTGAAGAGGAAGGCTAAGGCTGAGAAGAAGTTGGCAATCACAGTGTTCAGTTTCCCACCA
GATAAGGGCAACGTAGGAACAGCAGCGTACCTGAACGTCTTCTCTTCCATCTACTCGGTCCTTAGCGACCTCAAGAAAGACGGCTACAACGTCGAGGGAC
TTCCGGAGACATCAGAGGCCTTAATCGAAGAGGTCATTCACGACAAGGAGGCGCAGTTCAGCAGCCCGAATCTGAACGTCGCTTACAAGATGGGAGTGAG
AGAGTACCAGAGCCTCACTCCTTACGCAACAGCATTGGAAGAGAACTGGGGAAAGCCTCCGGGGAATCTCAACTCCGACGGAGAGAATCTTCTGGTTTAC
GGAAAGCAGTATGGCAATGTCTTCATCGGAGTCCAGCCGACTTTCGGATATGAGGGTGATCCGATGCGTCTGTTGTTCTCCAAATCGGCCAGCCCCCATC
ATGGCTTCGCCGCTTACTATTCTTTCGTCGAGAAGATCTTCAAAGCTGATGCTGTTCTTCACTTTGGCACTCACGGCTCGCTCGAGTTCATGCCGGGAAA
GCAAGTGGGAATGAGTGATGCTTGTTTCCCCGATAGTCTCATCGGCAATATTCCTAACGTTTATTACTACGCAGCAAATAATCCGTCTGAAGCTACGATA
GCGAAACGTCGTAGCTACGCTAACACGATCAGTTACTTGACTCCACCGGCAGAGAATGCCGGTCTTTACAAGGGACTTAAGCAATTGAGTGAGCTCATTT
CGTCTTACCAGTCGCTTAAAGACTCCGGTCGTGGACCTCAGATTGTTAGCTCAATTATCAGCACAGCTCGACAATGCAATCTCGACAAGGATGTCGAATT
ACCTGAAGAGGGAGCCGAGATCTCTGCCAAAGAGAGAGACAATGTGGTTGGTAAAGTATACTCCAAGATCATGGAAATCGAGTCCCGGCTTTTGCCATGT
GGTCTTCATGTCATCGGCGAGCCACCATCAGCCATGGAAGCTGTTGCAACCTTGGTCAACATTGCAGCATTGGACCGTCCTGAAGAAGGGATATCATCGC
TTCCGTCAATTCTAGCTGAGACGGTTGGACGCGAGATCGAAGATATTTATCGATGCAGTGACAAGGGAATTCTCAAGGATGTGGAGCTTCTTCGTCAGAT
AACCGATACATCACGAGGCGCTGTGAGCTGTCTCGGCTTTTGTCGAGAAGACCACTAA
AA sequence
>Lus10018068 pacid=23147937 polypeptide=Lus10018068 locus=Lus10018068.g ID=Lus10018068.BGIv1.0 annot-version=v1.0
MKLDVPYLVAVPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGMEPIVFAGRDPRTGKSHALHKRVEQLCTRAIRWGELKRKAKAEKKLAITVFSFPP
DKGNVGTAAYLNVFSSIYSVLSDLKKDGYNVEGLPETSEALIEEVIHDKEAQFSSPNLNVAYKMGVREYQSLTPYATALEENWGKPPGNLNSDGENLLVY
GKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDACFPDSLIGNIPNVYYYAANNPSEATI
AKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDSGRGPQIVSSIISTARQCNLDKDVELPEEGAEISAKERDNVVGKVYSKIMEIESRLLPC
GLHVIGEPPSAMEAVATLVNIAALDRPEEGISSLPSILAETVGREIEDIYRCSDKGILKDVELLRQITDTSRGAVSCLGFCREDH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G13630 ABAR, CHLH, CCH... ABA-BINDING PROTEIN, magnesium... Lus10018068
[exp]
0 1
AT5G13630 ABAR, CHLH, CCH... ABA-BINDING PROTEIN, magnesium... Lus10018067
[exp]
1.4 0.9869
AT3G43600 AtAO3, atAO-2, ... Arabidopsis thaliana aldehyde ... Lus10019386
[exp]
1.7 0.9352
AT5G13630 ABAR, CHLH, CCH... ABA-BINDING PROTEIN, magnesium... Lus10042061
[exp]
2.0 0.9825
Lus10015426
[exp]
2.4 0.9012
AT2G45550 CYP76C4 "cytochrome P450, family 76, s... Lus10005765
[exp]
3.2 0.9070
AT4G31500 SUR2, RNT1, RED... SUPERROOT 2, RUNT 1, RED ELONG... Lus10012400
[exp]
3.5 0.9341
AT3G45070 P-loop containing nucleoside t... Lus10033719
[exp]
5.3 0.9001
AT1G58440 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(... Lus10039649
[exp]
6.5 0.8658
AT1G57770 FAD/NAD(P)-binding oxidoreduct... Lus10035770
[exp]
6.7 0.8788
AT3G21670 Major facilitator superfamily ... Lus10030006
[exp]
6.9 0.8855

Lus10018068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.