Plant FIBer expression Database

Lus10018069 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13630 409 / 7e-131 ABAR, CHLH, CCH1, GUN5 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
AT3G57440 81 / 4e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042062
[exp]
299 / 5e-100 AT3G57440 92 / 4e-22 unknown protein
Lus10031072
[exp]
122 / 3e-32 AT3G57440 99 / 5e-25 unknown protein
Lus10042061
[exp]
48 / 1e-05 AT5G13630 689 / 0.0 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G051100
[exp]
410 / 3e-131 AT5G13630 2528 / 0.0 ABA-BINDING PROTEIN, magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.1), magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) (.2)
Potri.006G050900
[exp]
112 / 1e-28 AT3G57440 76 / 9e-17 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02514 CobN-Mg_chel CobN/Magnesium Chelatase
Representative CDS sequence
>Lus10018069 pacid=23147892 polypeptide=Lus10018069 locus=Lus10018069.g ID=Lus10018069.BGIv1.0 annot-version=v1.0
ATGTACTTGAGCAGGAAGTCGTTTGCATTCGACAGTGATGCCCCCGGAGCTGGCATGATGGAGAAGAGGAAAGTGTTCGAGATGGCGCTGAGTACTGCTG
AAGCCACTTTCCAGAACCTTGATTCTTCGGAAATCTCGCTCACTGATGTCAGCCATTATTTCGATTCGGATCCAACGAATCTGGTGCAGAGCTTGAGGAA
GGACAAAAAGAAGCCCAGTGCTTATATTGCTGACACCACTACTGCAAATGCTCAGGTTCGTACGCTGTCCGAGACAGTGAGGCTGGATGCACGAACCAAG
TTGCTGAACCCCAAGTGGTACGAAGGGATGATGTCAAGTGGCTACGAGGGTGTTAGAGAGATCGAGAAGAGGCTTACCAACACAGTTGGATGGAGTGCAA
CTTCGGGCCAAGTAGACAACTGGGTGTATGAAGAGGCGAACACAACCTTCATCAAGGATGAGGAGATGCTGAAAAGGCTGTTGGACACCAATCCGAATTC
ATTCAGGAAGCTTGTGCAGACATTCTTGGAGGCCAACGGACGTGGGTACTGGGAGACTTCTGAGGAGAATATAGAGAAATTGAAGCAGCTTTACTCTGAA
GTTGAGGACAAGATTGAGGGCGTGGATCGACCTTCTGTTGATGCTCAGTCGCTGAGCACAGGGACCGAATTGAAGAGAAAAATTCTGTGTGAAGAGAGCT
CGAGCCTGCTTTCCACGGCTTCAGGATCTTGCATCTCATCGTCGCCGGATGTGATTCCAGCTCACAAGCTCAGGATCGTTGCCGTTGTTGCTCTCGACCA
TGACATGAAGCTCAAGGTGGTGAGGAAGAAGCGATCCAAAGTCTACTGGACTTCCATTGATCAAGAGAAGGAAGTCGTCCTAAGATGTGCAGCAAAGGTG
CCAGCGAAATCACTCTCCACGGAAAACTCATGCCTCACGAGTACTTCCAGTGCCAGTTCGAGCTCGAGGAGCTGGTACAACATCGGAGGTACTAAGAACA
CAGAGGTCAGCTCCGCCCAGAAGTGGAGGAAGAAACAAGCAGGGTTCAGCTCCGGCTCAAAACACATGAATCAGCAAGCTAACTCAATCCTGCAGCTGCT
GTCTCGTGGTTCTTCCTCTGAAGTCAGGATTCGTCAGGTGCTTGGTGACAGCCCTGACACAAGCAAAGCCCTAAGAATGTTGCTAAGGCGGGAGGAGATT
AAGAGATCGGGTTCAGGAGGGCGTCAGGATCCTTATATTTACAAGGTACGCTCGCAATCTACATTTGGAAAAACTGAATGTAAGAAGATATCATGTGGAA
GTGATAGGTGA
AA sequence
>Lus10018069 pacid=23147892 polypeptide=Lus10018069 locus=Lus10018069.g ID=Lus10018069.BGIv1.0 annot-version=v1.0
MYLSRKSFAFDSDAPGAGMMEKRKVFEMALSTAEATFQNLDSSEISLTDVSHYFDSDPTNLVQSLRKDKKKPSAYIADTTTANAQVRTLSETVRLDARTK
LLNPKWYEGMMSSGYEGVREIEKRLTNTVGWSATSGQVDNWVYEEANTTFIKDEEMLKRLLDTNPNSFRKLVQTFLEANGRGYWETSEENIEKLKQLYSE
VEDKIEGVDRPSVDAQSLSTGTELKRKILCEESSSLLSTASGSCISSSPDVIPAHKLRIVAVVALDHDMKLKVVRKKRSKVYWTSIDQEKEVVLRCAAKV
PAKSLSTENSCLTSTSSASSSSRSWYNIGGTKNTEVSSAQKWRKKQAGFSSGSKHMNQQANSILQLLSRGSSSEVRIRQVLGDSPDTSKALRMLLRREEI
KRSGSGGRQDPYIYKVRSQSTFGKTECKKISCGSDR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G13630 ABAR, CHLH, CCH... ABA-BINDING PROTEIN, magnesium... Lus10018069
[exp]
0 1
AT1G33110 MATE efflux family protein (.1... Lus10020307
[exp]
3.7 0.8950
AT1G16720 HCF173 high chlorophyll fluorescence ... Lus10034781
[exp]
6.5 0.8847
AT2G44310 Calcium-binding EF-hand family... Lus10009192
[exp]
7.4 0.8391
AT2G45550 CYP76C4 "cytochrome P450, family 76, s... Lus10005765
[exp]
7.7 0.8775
AT3G16910 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-... Lus10037734
[exp]
7.9 0.8631
AT3G16910 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-... Lus10016869
[exp]
8.3 0.8626
AT5G01920 STN8 State transition 8, Protein ki... Lus10022730
[exp]
10.2 0.8936
AT4G37380 Tetratricopeptide repeat (TPR)... Lus10024971
[exp]
10.5 0.8790
AT5G23120 HCF136 HIGH CHLOROPHYLL FLUORESCENCE ... Lus10010200
[exp]
11.7 0.8852
AT5G13630 ABAR, CHLH, CCH... ABA-BINDING PROTEIN, magnesium... Lus10018068
[exp]
11.8 0.8735

Lus10018069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.