Plant FIBer expression Database

Lus10018070 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G57450 65 / 2e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035455
[exp]
74 / 5e-19 AT3G57450 69 / 3e-17 unknown protein
Lus10031071
[exp]
72 / 2e-18 AT3G57450 69 / 5e-17 unknown protein
Lus10029496
[exp]
58 / 1e-12 AT3G57450 64 / 6e-15 unknown protein
Lus10019730
[exp]
57 / 3e-12 AT3G57450 66 / 8e-16 unknown protein
Lus10016391
[exp]
57 / 3e-12 AT3G57450 66 / 1e-15 unknown protein
Lus10042063
[exp]
0 / 1 AT3G57450 67 / 1e-15 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G055901
[exp]
74 / 4e-19 AT3G57450 70 / 2e-17 unknown protein
Potri.001G263404
[exp]
64 / 4e-15 AT3G57450 64 / 3e-15 unknown protein
Potri.006G050800
[exp]
64 / 8e-15 AT3G57450 59 / 4e-13 unknown protein
Potri.012G032500
[exp]
54 / 4e-11 AT3G57450 66 / 2e-15 unknown protein
Potri.009G058500
[exp]
49 / 4e-09 AT3G57450 47 / 1e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10018070 pacid=23147975 polypeptide=Lus10018070 locus=Lus10018070.g ID=Lus10018070.BGIv1.0 annot-version=v1.0
ATGAGTAAGTACGTGGAGTTGTTGGACGCCACGGTCAGATTCGCCGGGAGATTTTACACGCACTGCCCTCAAACTGCTCGCCTCTACTACCATCCTCCTT
CCAATTCCGGCCATCTCGCCGGCGCTTCTGCCTCTACTACTCAGCCGGCCGGCGACAAATCGACTCGTGACAGCAAATCCGCTGCTGCTGCTGGTTTTGC
TTTGGAGGCTTCCTTGGGGGGGTTTGATTCTTCTGCGCATCAGTTGGTGCGTCTTACTCTTCTCTGA
AA sequence
>Lus10018070 pacid=23147975 polypeptide=Lus10018070 locus=Lus10018070.g ID=Lus10018070.BGIv1.0 annot-version=v1.0
MSKYVELLDATVRFAGRFYTHCPQTARLYYHPPSNSGHLAGASASTTQPAGDKSTRDSKSAAAAGFALEASLGGFDSSAHQLVRLTLL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G57450 unknown protein Lus10018070
[exp]
0 1
AT3G03050 RHD7, ATCSLD3, ... ROOT HAIR DEFECTIVE 7, KOJAK, ... Lus10030455
[exp]
7.5 0.8559
AT1G76200 unknown protein Lus10034571
[exp]
8.8 0.8202
AT4G08980 FBW2 F-BOX WITH WD-40 2 (.1.2.3.4.5... Lus10010351
[exp]
8.9 0.8066
AT2G31880 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED... Lus10017963
[exp]
11.3 0.8263
AT2G40095 Alpha/beta hydrolase related p... Lus10014849
[exp]
13.6 0.7982
AT3G63000 NPL41 NPL4-like protein 1 (.1) Lus10017163
[exp]
17.9 0.8224
AT1G51660 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-A... Lus10035764
[exp]
20.6 0.7975
AT1G70985 hydroxyproline-rich glycoprote... Lus10034112
[exp]
22.0 0.8188
AT5G56750 NDL1 N-MYC downregulated-like 1 (.1... Lus10020241
[exp]
27.0 0.7949
AT2G42040 unknown protein Lus10004164
[exp]
27.3 0.7862

Lus10018070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.