Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28730 741 / 0 NFD, SSRP1, ATHMG NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) AT3G51880 63 / 2e-11 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT1G20693 60 / 1e-10 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT4G23800 59 / 8e-09 3xHMG-box2, AT4G23800 3xHigh Mobility Group-box2, HMG (high mobility group) box protein (.1), HMG (high mobility group) box protein (.2) AT1G20696 52 / 1e-07 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT4G35570 50 / 2e-07 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT4G11080 52 / 1e-06 3xHMG-box1 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) AT2G34450 47 / 7e-06 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT2G17560 44 / 4e-05 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042065 [exp] 1091 / 0 AT3G28730 843 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Lus10012252 [exp] 59 / 2e-10 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10016025 [exp] 59 / 5e-10 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012250 [exp] 60 / 2e-09 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10040192 [exp] 55 / 3e-08 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10030738 [exp] 54 / 4e-08 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10001909 [exp] 55 / 1e-07 AT4G11080 496 / 2e-173 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Lus10035511 [exp] 54 / 1e-07 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10003904 [exp] 55 / 2e-07 AT4G11080 506 / 2e-177 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078500 [exp] 773 / 0 AT3G28730 836 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Potri.004G124000 [exp] 762 / 0 AT3G28730 875 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D, high mobility group (.1) Potri.002G009000 [exp] 61 / 1e-10 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.005G252600 [exp] 59 / 5e-10 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3) Potri.005G101400 [exp] 54 / 1e-08 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 52 / 2e-07 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.003G138000 [exp] 54 / 3e-07 AT4G11080 302 / 1e-97 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.001G093700 [exp] 53 / 5e-07 AT4G11080 325 / 2e-106 3xHigh Mobility Group-box1, HMG (high mobility group) box protein (.1) Potri.008G067400 [exp] 49 / 2e-06 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.007G000900 [exp] 49 / 3e-06 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box CL0266 [flax] [poplar] PH PF03531 [flax] [poplar] SSrecog Structure-specific recognition protein (SSRP1)
Representative CDS sequence Show only first row Show all	>Lus10018073 pacid=23147978 polypeptide=Lus10018073 locus=Lus10018073.g ID=Lus10018073.BGIv1.0 annot-version=v1.0 ATGGCGGACGGTCACTTGTACAACAACATCTCAATCGGAGGCCGCGGCGGTACCAACCTCGGGCAGTGCAAGATTTATTCAGGTGGCATAATGTGGAAGA AACAGGGAGGTGGTAAAACAGTGGACGTTGACAAATCTGATGTTGCTGGATTGACGTGGATGAAAGTACCAAGAAGCAATCAACTGGGGGTTCAAATCAA AGATGGACTATACTACAAATTTACTGGCTTCCGCGACCAGGACGTGACTAGCCTCAACAACTATTTCCAAAGCCATTTTGGTATGACGCCAGAGGACAAG CAGCTTTCTGTCTCTGGGCGCAACTGGGGGGACATTAACTTAAGTGGTAATATGCTTACCTTTTTAGTGGGTTCAAAGCAAGCCTTCGAGGTATCCTTAG CAGATGTTGCACAGACTTCGATGCAAGGCAAAAATGATGTCGTTTTAGAGTTCCATGTGGATGACACAACCGGAGCTAATGAGAAAGATTCATTGATGGA ATTGAGTTTTCACGTACCTAATTCTAACACCCAATTTGTTGGTGATGAGAACCGTCCTGCTGCTCAGGTATTCCGTGAAAAAATTATGTCAATGGCAGAT GTTGGTGCTGGGGCTGAAGAAGCTGTTGTTACATTTGAGAGTGTTGGCATTCTCACACCAAGGGGTCGGTACAATGTTGAACTTCATCTATCCTTCCTAC GCCTCCAAGGGCAGGCCAATGATTTCAAGATTCAGTACAGCAGCGTAGTTCGACTGTTTTTACTTCCAAAGTCTAACCAACCACATACCTTTGTTATTGT GACTCTTGATCCTCCCATCCGAAAAGGACAAACTCTATATCCACATATCGTGTTGCAGTTTAATACAGATGAGGTGGGAGAACAAACTCTGACAATAAAT GATGATCTTTTGAATACGAAGTACAAGGACAAATTAGAAGCATCTTATAAGGGGCTTATTCACGAAGTGTTCACTACCATATTGCGTGGTTTGTCTAGCG CAAAAGTAACTAAGCCAGGAAAATTCCGTAGCTCTCAAGATGGTTATGCTGTGAAGTCATCTTTGAAAGCTGAAGATGGACTCCTGTATCCTCTTGAAAA GAGTTTCTTCTTCTTGCCTAAACCGCCAACTCTTATTCTTCATGAAGAGATTGACTATGTGGAGTTTGAGAGGCATGCTGCTGGTGGCTCAAACATGCAG TACTTCGATTTTCTAGTTAAACTAAAGACTGAGCAAGAACATCTATTTCGGAACATCCAGAGGAATGAATACCATAATCTCTTTGAATTTGTTCGTGGGA AGGGTTTGAAGGTTATGAACCTGGGAGGTAGTCAACCAACAGCCGGAGTGCCTATTATGGATAGTGTTGTAGACCATCATCCAGTTGACTCTTATTTGGT GCAAATTCAAAATGAAGCTGGTGGTGGAGATGAAAGTGATGAGGAGGATGAAGACTTTGTTGCCGAGAAAGATGATTCAGGCTCACCTACAGATGATTCC GGGGATGAATCAAATGGCAGTGACAGTGGAAATGAGAAAGAGGCAAGCCTTGAAGCTTCATCTTCTAAGCCTGTGTCAAAGAAGAAAGCTAAAGATGTTG AGGGAGATGGTTCGAAGAAGAGGAAACTACCGAAGCAGAAGAAAGATCCCAATGCACCAAAGAAAGCTATGACTAGTTTCTTGATTTTCTCTCAGAATGA GAGAGAGAATATTAAGAAGAGTAATCCTGGAATTTCATTCGGGGATGTTGCAAAAGCGCTTGGTGATAAGTGGAAGACAATGTCAGCGGATGAAAAACAA CCATTTAACGAGATGGCTAAAGCAGACTTGAAACGTTACCAAGATCAAGCGAGTGGATACAACAAAAACCCACCACAGCCAGACTCCACCGTTGATGTAG ACAGCGACTAA
AA sequence Show only first row Show all	>Lus10018073 pacid=23147978 polypeptide=Lus10018073 locus=Lus10018073.g ID=Lus10018073.BGIv1.0 annot-version=v1.0 MADGHLYNNISIGGRGGTNLGQCKIYSGGIMWKKQGGGKTVDVDKSDVAGLTWMKVPRSNQLGVQIKDGLYYKFTGFRDQDVTSLNNYFQSHFGMTPEDK QLSVSGRNWGDINLSGNMLTFLVGSKQAFEVSLADVAQTSMQGKNDVVLEFHVDDTTGANEKDSLMELSFHVPNSNTQFVGDENRPAAQVFREKIMSMAD VGAGAEEAVVTFESVGILTPRGRYNVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIVTLDPPIRKGQTLYPHIVLQFNTDEVGEQTLTIN DDLLNTKYKDKLEASYKGLIHEVFTTILRGLSSAKVTKPGKFRSSQDGYAVKSSLKAEDGLLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMQ YFDFLVKLKTEQEHLFRNIQRNEYHNLFEFVRGKGLKVMNLGGSQPTAGVPIMDSVVDHHPVDSYLVQIQNEAGGGDESDEEDEDFVAEKDDSGSPTDDS GDESNGSDSGNEKEASLEASSSKPVSKKKAKDVEGDGSKKRKLPKQKKDPNAPKKAMTSFLIFSQNERENIKKSNPGISFGDVAKALGDKWKTMSADEKQ PFNEMAKADLKRYQDQASGYNKNPPQPDSTVDVDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10018073 [exp]	0	1
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10040140 [exp]	1.7	0.9345
AT1G77720		PPK1	putative protein kinase 1 (.1)		Lus10025634 [exp]	5.3	0.9328
AT1G07970			unknown protein		Lus10038462 [exp]	8.1	0.9286
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10035051 [exp]	9.2	0.9066
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	11.6	0.9312
AT1G69070			unknown protein		Lus10019174 [exp]	14.6	0.9302
AT5G01660			unknown protein		Lus10012220 [exp]	14.9	0.9111
AT1G65710			unknown protein		Lus10010952 [exp]	17.0	0.9287
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	19.4	0.9276
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	19.5	0.9205

Compare expression of checked genes

Lus10018073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.