Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57400 265 / 4e-82 unknown protein AT5G52500 216 / 1e-64 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042067 [exp] 441 / 9e-153 AT3G57400 107 / 4e-26 unknown protein Lus10042066 [exp] 387 / 2e-133 AT3G57400 159 / 3e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G050100 [exp] 354 / 6e-116 AT3G57400 349 / 3e-115 unknown protein Potri.016G056300 [exp] 323 / 9e-104 AT3G57400 343 / 5e-113 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018074 pacid=23147885 polypeptide=Lus10018074 locus=Lus10018074.g ID=Lus10018074.BGIv1.0 annot-version=v1.0 ATGGGCACCACCACCACTACCGCCACACCAAAGTCCACCACTAGAGCCCATAACAACTCCTCCTCTTCTTCCACCGACAACCGTGGTAGCTCCCCCGTCG GCGGCGGGATGGGCTTCCTCCTTGTCTTCTTCCCCGACGACAACAAGGCCGCTGTAAGGCAGCAAACTCTTCACCCCTCCCCTTCCGCCGCCTATTCTCC GGGAAACACTACTTGCAATTACTCCAAACAAACAACACCAACCGCCATTATCAAACGAACAAATTCCAGCAATCCAATCCTCACCAAAGCTCAATCCACC ATCTCAATCTGCTCCTTCTTGCTCCTCTTCTCCTTCCTCCTCTTCGCCCTCTCCACTTTCGAACCCCCTGTCCGCCCTCCCCGTCCCGCCACCATCCGTC TCACCTCCCGCCGCTTCCTCTCCGACGTCAACACTCCCGCCACCACCGTCAGAACCTCCAACAGCCTCTACTCCTGGCTCACCGACACCGCCGGCTCAAT CGTCCGACGAACAGAACTAGAAGACGATGCTGCTACTGCTGCTTCATTTGCTCTGCAAGGTATGGGCCGGCTTTACCGGCGGGGAACCAGATCCATGGCT GACCTCCTCGTTGGCCACGTGGCGGAGGATACCACCGTCGAAGAATTCCGTCTGTTTCTCCGGCTGCTTCACCGGTCCGGCGTCACCTCAAGAAGCGACG TCGTATTCCTCTTCCCTTCATTTTCAAATTCCAGATCCGGATTTGAAAGCGTGATTCTAGAAGAGAACGACTCCTTCTCCGCGCTGATTCAGCGGCATTT GACCACCACGAATCGCTCCCGATCGGCGTTGCTTACGGAGAACGCGACGGGAGCGGAACGTTCGTCCTTGTCGAGATTCGACGCCACGCGCTTCGTCAGG AGAAGATCGACTAACAAGGAAACTCCGGTGGTGGAGCCCACTTTGTGGGGTAAGAAAATTCGACTCAACGCTACCAGCAGCACTGTCATTATTAATGCCA CTGACGACGGTGATGGCGGCGAGTCAACCCGGCTGAGTTACGGGTCGGTGGTCGGTTTCGAAGCGAACGAGCTCGACCCGGAAAATTCCCTCCACGGTTT CCTCCAGAACCCGCAGATGGGCCTGCGGCGTTGGGCTTGTTACCCGATGCTCCTGGGACGGGTCAAGAGGAACTTCAAGCACGTCATGCTGGCGGACGTG AAATCCACTCTCCTAGTCGCCGGCGATGCGATCGGTCGTGTCAAGAACCTAGCACCCGAGTCGGTAATGTATTATCTCACCTCATCAGCCAAACACGAAA AGGGCGGGAGAAGAGAGAAATCACTCAAATCAGGGCATCGCCCAGCGGTGGTGAATCCGGCGGTTGTGACGGGCGGAGGGAGAGGAATCCGTCGATTCTC AACTGCGATGTTGACGGAGATCGTGAGGGCGGCCATGCAACAGCACAAGAGGAAAGGCGGCGGGGTTATTACGGAGTCGGGGATTTTGACCCACCTGCTT ATTGGGAGCAGCAGCGAGCACATACTGAAGAACGTGAAGTTGACGGCGTCGCCGGAGTCGATCCCGGATTGGGGCGTGGTTCGGGAGTCGGACTCTTCCA AGTATTCGATAATCCAGCGCGGTAATAATAAGAGTAGTAGTGATGATGTAGGATCAGTAATTATGAAGAGAATATGTTCATGTGAGGATCATGTAGATTC TGTTTACAGGGATTGCTGCTACGGTAGAGAATTATAA
AA sequence Show only first row Show all	>Lus10018074 pacid=23147885 polypeptide=Lus10018074 locus=Lus10018074.g ID=Lus10018074.BGIv1.0 annot-version=v1.0 MGTTTTTATPKSTTRAHNNSSSSSTDNRGSSPVGGGMGFLLVFFPDDNKAAVRQQTLHPSPSAAYSPGNTTCNYSKQTTPTAIIKRTNSSNPILTKAQST ISICSFLLLFSFLLFALSTFEPPVRPPRPATIRLTSRRFLSDVNTPATTVRTSNSLYSWLTDTAGSIVRRTELEDDAATAASFALQGMGRLYRRGTRSMA DLLVGHVAEDTTVEEFRLFLRLLHRSGVTSRSDVVFLFPSFSNSRSGFESVILEENDSFSALIQRHLTTTNRSRSALLTENATGAERSSLSRFDATRFVR RRSTNKETPVVEPTLWGKKIRLNATSSTVIINATDDGDGGESTRLSYGSVVGFEANELDPENSLHGFLQNPQMGLRRWACYPMLLGRVKRNFKHVMLADV KSTLLVAGDAIGRVKNLAPESVMYYLTSSAKHEKGGRREKSLKSGHRPAVVNPAVVTGGGRGIRRFSTAMLTEIVRAAMQQHKRKGGGVITESGILTHLL IGSSSEHILKNVKLTASPESIPDWGVVRESDSSKYSIIQRGNNKSSSDDVGSVIMKRICSCEDHVDSVYRDCCYGREL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57400			unknown protein		Lus10018074 [exp]	0	1
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10033850 [exp]	1.0	0.8557
AT1G10020			Protein of unknown function (D...		Lus10032807 [exp]	3.0	0.8163
AT1G32860			Glycosyl hydrolase superfamily...		Lus10017344 [exp]	7.1	0.8221
AT4G33640			unknown protein		Lus10020463 [exp]	8.2	0.8045
AT3G52500			Eukaryotic aspartyl protease f...		Lus10021292 [exp]	8.4	0.7941
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10013344 [exp]	13.3	0.7726
AT2G18910			hydroxyproline-rich glycoprote...		Lus10006958 [exp]	14.9	0.7926
AT4G23820			Pectin lyase-like superfamily ...		Lus10023101 [exp]	16.4	0.7842
AT5G67070		RALFL34	ralf-like 34 (.1)		Lus10003931 [exp]	16.6	0.7616
AT3G57400			unknown protein		Lus10042066 [exp]	16.7	0.7864

Compare expression of checked genes

Lus10018074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.