Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41720 997 / 0 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 233 / 3e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 214 / 6e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74850 207 / 6e-56 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT3G53700 201 / 1e-54 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 198 / 2e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 202 / 3e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 197 / 4e-54 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 197 / 7e-54 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 196 / 2e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042068 [exp] 1507 / 0 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002107 [exp] 231 / 9e-65 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 228 / 6e-63 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 213 / 1e-57 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10003657 [exp] 206 / 1e-56 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10022290 [exp] 200 / 3e-54 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10014245 [exp] 191 / 5e-52 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 191 / 3e-51 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008593 [exp] 189 / 3e-51 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G049900 [exp] 1136 / 0 AT2G41720 1169 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 231 / 2e-65 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 229 / 7e-64 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 217 / 1e-59 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G124900 [exp] 217 / 2e-59 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 211 / 2e-58 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G069100 [exp] 206 / 9e-56 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.006G264800 [exp] 206 / 2e-55 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.013G032600 [exp] 201 / 2e-55 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 201 / 3e-55 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018075 pacid=23147859 polypeptide=Lus10018075 locus=Lus10018075.g ID=Lus10018075.BGIv1.0 annot-version=v1.0 ATGGCGTTCGTTCTAAACCATCATCTCCACGGCTGCCACCACTTCACCTCCTCATTCGTCTGCAACATGTCCAAGAACCACGCGGCATTCGAAGAGAAGA AGATTGGCTTCGTTGACTACGACAAGGGCGAGCACCTCGTTTCCACTGAGCTCAGCGGAGTTAGGCATGACAAAATTCCTAGACGTTACCGCCTGAGAGT CGATCGAGATAGGTTCCAGAAGGACTGGTCCCTCTCTCAGGTCGTCGGAAAGGTTCTCGAGCTCGACCCTCGCCGTGACGATGTCGAGCGGGTCTTGAAC CATTGGGTCGGCCGCTTCGCTCGCAGGAATTTCCCTTATCTTATCAAGAATTACCGTGCTTCCACTGACATCTATAATAGGATGATCAAGCTGCTGGCTA GGCATAACCGGATTGACCAGGCTCGGGGGTTGTTCTTTGAAATGCAGAAATGGAGGTGCAAACCTGATGTTGAGACTTGCAATGCACTTATTAATGCTCA CGGCAGAGCAGGGCAATGGCGGTGGGCAATGAATATAATGGAAGACATGCTTCGCGAAGCTATAACACCTAGTCGATCCACATATAATAATTTGATTAAT TCTTGTGGATCCAGTGGTAATTGGAGAGAGGCACTGAAGATCTGCAAGAAAATGACTGAAAATGGTGTTGGCCCTGATTTAGTGACTCACAACATTGTTT TATCTGCTTACAAGACTGGGGCTCAGTATTCGAAAGCCTTGTCTTACTTTGAGCTGATGAAAGGAACAAACATTAGACCAGATACAACAACACTCAACAT TGTGATGCATTGCTTAGTGAAGCGTGGTCAATATCAGAAAGCGCTGGATATTTTCAATTCCATGAGGGATAAGAGAGCAGATTGCCTTCCTGATGTCGTC ACCTTTACAACTGTCATCCATTTGTATTCTTCAATTGGGAAGATTGAAAATTGTTTGGCTGTGTTCAACACCATGCTCTCCGAGGGGATGAGGCCTAATA TTGTCTCATATAATGCCTTGATAGGAGCATATGCTTCTCGCGGGATGAGTGATGAAGCACTTTCAATTTTTCAGGAAATTAGGAAAAACGGGTTTAGTCC TGATGTTGTGTCCTACACTTCTTTGCTGAGTTCCTATGGAAGATCACATCAACCAGTGAAAGCCAGGGAGGTGTTTGAGATGATGAAGGGAGAAAAACTG AAACCAAATATTATCAGCTATAATGCATTGATTGATGCATATGGATCTAATGGACTCTTAGCGGAAGCGGTAGCCATCTTACGGGAAATGGACATTGCTG GTATTAAGCCAAATGTAGTGTCTGTAAGCACTCTTTTAGCTTCTTGTGCTCGTTGTGGCCGGAAAGTTAATATCGATGCAGTGCTATCGGCAGCTGAAAT GAGGGGGATTAGATTAAACACCGTGGCTTATAATTCAGCTATTGGAGCGTATATGAACGTTGGGGAATATGAGAAGGCTATTGCATTGTATCGATCAATG GGTAAAAGGAAAGTATTTCATGATTCTGTCACTTACACCGTCTTGATAAGTGGCTGCTGCAAGATGTCTAAATACAGTGACGCGACAGAGTTTTTTAGCA AAATGGTAGATTCAAAAATGACCTTGACCAAGGAGGGCCTGGTTGCAGAAGCAGAATCTGTGTTCAACATGATGAAGACATCTGGTTGTTATCCTGATGT TATTGCCTATACTATGATGCTACACACGTACAATTTAGCAGGCACGTTTCACATGTTGAATTGGTGCAAATGCTGGGAAAAAGCTTGCGGTTTACTTCAA GAAATGGAAGCCAATCGAATACAACCAGATACTATTGCATGTTCGTCTCTAATGAGAGCTTTCAACAAAGGAGGGGACCCGCTCCAGGTTCTTGCTTTGG CTCAGCGGATGAATGATAAAGGAATCCCATTCAACGATGCAATTTTCTTTGAAATGATATCTGCGTGTAGCTTGTTACGAGATTGGAAGAAAGCAATTGA CCTGGCTCGACTGATGGAGCCTTCATTCCCTGTGGTTTCGGTTGGGGTTTTGAATCAGCTTCTTCATCTTCTCGGAAAAAGTGGGAAAGTTGATTCTATG ATAAAGGTATTTTACAAGATAATAGAATCGGGTGCCGAGATAAATTCCAACAGTTATTCAGTATTGTTGAAGAATCTTTTAACCGTTGGAAACTGGAGAA AATACATAGAGGTTTTGGAGTGGATGGAGAGTTCAAGAGTCGAGCCGTCTTATGGAATGTACGAAGACATATACAACTTTGCACATAAACACGGTGGAGA GTACGCCGATACCATCAAAGAAAGAGTCGATTCATTGAGAAGGCAGCGGCTAGCCACTAGCTAG
AA sequence Show only first row Show all	>Lus10018075 pacid=23147859 polypeptide=Lus10018075 locus=Lus10018075.g ID=Lus10018075.BGIv1.0 annot-version=v1.0 MAFVLNHHLHGCHHFTSSFVCNMSKNHAAFEEKKIGFVDYDKGEHLVSTELSGVRHDKIPRRYRLRVDRDRFQKDWSLSQVVGKVLELDPRRDDVERVLN HWVGRFARRNFPYLIKNYRASTDIYNRMIKLLARHNRIDQARGLFFEMQKWRCKPDVETCNALINAHGRAGQWRWAMNIMEDMLREAITPSRSTYNNLIN SCGSSGNWREALKICKKMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTLNIVMHCLVKRGQYQKALDIFNSMRDKRADCLPDVV TFTTVIHLYSSIGKIENCLAVFNTMLSEGMRPNIVSYNALIGAYASRGMSDEALSIFQEIRKNGFSPDVVSYTSLLSSYGRSHQPVKAREVFEMMKGEKL KPNIISYNALIDAYGSNGLLAEAVAILREMDIAGIKPNVVSVSTLLASCARCGRKVNIDAVLSAAEMRGIRLNTVAYNSAIGAYMNVGEYEKAIALYRSM GKRKVFHDSVTYTVLISGCCKMSKYSDATEFFSKMVDSKMTLTKEGLVAEAESVFNMMKTSGCYPDVIAYTMMLHTYNLAGTFHMLNWCKCWEKACGLLQ EMEANRIQPDTIACSSLMRAFNKGGDPLQVLALAQRMNDKGIPFNDAIFFEMISACSLLRDWKKAIDLARLMEPSFPVVSVGVLNQLLHLLGKSGKVDSM IKVFYKIIESGAEINSNSYSVLLKNLLTVGNWRKYIEVLEWMESSRVEPSYGMYEDIYNFAHKHGGEYADTIKERVDSLRRQRLATS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10018075 [exp]	0	1
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Lus10042068 [exp]	2.0	0.8592
AT5G35220		EGY1	ETHYLENE-DEPENDENT GRAVITROPIS...		Lus10005688 [exp]	2.4	0.8484
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10013894 [exp]	4.8	0.8618
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	5.5	0.8393
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10043354 [exp]	6.9	0.8349
AT1G78930			Mitochondrial transcription te...		Lus10035714 [exp]	13.6	0.7807
AT1G08490		ATSUFS, SUFS, A...	chloroplastic NIFS-like cystei...		Lus10031670 [exp]	14.0	0.7246
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031736 [exp]	16.4	0.8447
					Lus10040651 [exp]	18.0	0.7334
AT5G02860			Pentatricopeptide repeat (PPR)...		Lus10002107 [exp]	23.2	0.8319

Compare expression of checked genes

Lus10018075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.