Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16460 246 / 1e-81 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) AT3G51090 211 / 5e-67 Protein of unknown function (DUF1640) (.1) AT2G35090 48 / 1e-06 Protein of unknown function (DUF1640) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042073 [exp] 538 / 0 AT2G16460 252 / 4e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Lus10041812 [exp] 193 / 2e-60 AT2G16460 252 / 1e-84 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Lus10018078 [exp] 43 / 0.0002 AT2G16485 986 / 0.0 nucleic acid binding;zinc ion binding;DNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G123700 [exp] 255 / 2e-85 AT2G16460 352 / 2e-124 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2) Potri.007G016300 [exp] 225 / 2e-73 AT2G16460 311 / 2e-108 Protein of unknown function (DUF1640) (.1), Protein of unknown function (DUF1640) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07798 [flax] [poplar] DUF1640 Protein of unknown function (DUF1640)
Representative CDS sequence Show only first row Show all	>Lus10018079 pacid=23147947 polypeptide=Lus10018079 locus=Lus10018079.g ID=Lus10018079.BGIv1.0 annot-version=v1.0 ATGGCTCTGTGTAAACGGATTGCTCAATCGGGAGCTCATCTTGTCAAATTTCGTCTCCTTGATGCCACTCATAAGAGCTCATCCTTCTCTGCTGCTGGAA GTGGTAAATTCCAGTACGGCAGGCACTTCTCCGAGCTCGCCGGGCCTAGCAGCGCTAACCGTGTGTGTCTTGTGGACACATTACAATTGGTGAGGAGATT AGAATCGCAAGGACTGCCATCGAAGCATGCAGAGGCGGTAACCACGGCTTTGATTTCAGTTTTAAACGACAGCTTCGAGAGTCTCTCGCATTCTTACGCT TCCAAAGAAGAAATGCAGAAGATTGGAATGATTCTAGACTCGAGCCTCTCAAAGTTCAAGGCTGAAGTGCAGAGCGCCCAGGTAGCTCGGGAAATGATTC AGGAATCGAACCACTCCAAGTTTCAGAATGAACAACAATCCAACTTCTCTAAGTTCCAGTCCGAGATACAAAGCTCTAAGGATCATCATTTTTCCATGTT GCAACGCGAAACTGAAAAGCAAAAAGCTGACACAGATAAAGTACATGAAAAGTTGCAGGGTGACATAAATAAAGTAGAAGAAAAGTTGCAGGGTGACATA GACAAAAAATATAGTGAACTGAGGTATGAAATTGACAAAGCAACCGCTGGCCAACGCTTGGATTTAAATCTCGAAAGAGGGCGGACACGGGACGAGCTGG CCAATCAAAAAGCAGAAACTAACAACTTGGCAAACAAGCTAGATCTGGAATCTAATGCAGTGCGAGCATTAATTGAAACAGCAAAGTATGACATAATCAA ATACTGCATCGGTACACTTGTGTCCATATCAGCTGTGGGGCTTGCAGTCCTCCGCATAATGCTGTAA
AA sequence Show only first row Show all	>Lus10018079 pacid=23147947 polypeptide=Lus10018079 locus=Lus10018079.g ID=Lus10018079.BGIv1.0 annot-version=v1.0 MALCKRIAQSGAHLVKFRLLDATHKSSSFSAAGSGKFQYGRHFSELAGPSSANRVCLVDTLQLVRRLESQGLPSKHAEAVTTALISVLNDSFESLSHSYA SKEEMQKIGMILDSSLSKFKAEVQSAQVAREMIQESNHSKFQNEQQSNFSKFQSEIQSSKDHHFSMLQRETEKQKADTDKVHEKLQGDINKVEEKLQGDI DKKYSELRYEIDKATAGQRLDLNLERGRTRDELANQKAETNNLANKLDLESNAVRALIETAKYDIIKYCIGTLVSISAVGLAVLRIML

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16460			Protein of unknown function (D...		Lus10018079 [exp]	0	1
AT4G00170			Plant VAMP (vesicle-associated...		Lus10010360 [exp]	2.8	0.8642
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10037325 [exp]	9.8	0.8368
AT1G69340			appr-1-p processing enzyme fam...		Lus10037119 [exp]	10.7	0.8592
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Lus10039158 [exp]	11.0	0.8474
AT3G19340			Protein of unknown function (D...		Lus10012581 [exp]	11.5	0.8544
AT1G16750			Protein of unknown function, D...		Lus10039917 [exp]	11.6	0.8148
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	13.3	0.8602
AT4G00840			DHHC-type zinc finger family p...		Lus10002694 [exp]	16.5	0.8361
AT4G30900			DNAse I-like superfamily prote...		Lus10036263 [exp]	18.6	0.7898
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10009477 [exp]	18.7	0.8220

Compare expression of checked genes

Lus10018079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.