Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21340 664 / 0 MATE efflux family protein (.1.2) AT4G39030 594 / 0 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1) AT2G38330 91 / 3e-19 MATE efflux family protein (.1) AT3G08040 83 / 1e-16 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT4G38380 81 / 7e-16 MATE efflux family protein (.1) AT1G51340 76 / 2e-14 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042074 [exp] 808 / 0 AT2G21340 603 / 0.0 MATE efflux family protein (.1.2) Lus10017964 [exp] 629 / 0 AT2G21340 622 / 0.0 MATE efflux family protein (.1.2) Lus10041955 [exp] 592 / 0 AT2G21340 598 / 0.0 MATE efflux family protein (.1.2) Lus10017498 [exp] 572 / 0 AT2G21340 610 / 0.0 MATE efflux family protein (.1.2) Lus10023943 [exp] 98 / 3e-21 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 96 / 2e-20 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10014440 [exp] 93 / 1e-19 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10029517 [exp] 81 / 1e-15 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10039609 [exp] 77 / 1e-14 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122900 [exp] 723 / 0 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2) Potri.009G122600 [exp] 675 / 0 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2) Potri.005G102800 [exp] 84 / 9e-17 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 80 / 2e-15 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.004G183600 [exp] 79 / 4e-15 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.016G053600 [exp] 77 / 8e-15 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G053700 [exp] 73 / 2e-13 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 69 / 3e-12 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G143400 [exp] 68 / 8e-12 AT4G38380 626 / 0.0 MATE efflux family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018080 pacid=23147867 polypeptide=Lus10018080 locus=Lus10018080.g ID=Lus10018080.BGIv1.0 annot-version=v1.0 ATGCAGCTCTCAACTCTACATCAATCACTCCCCATTCCTCTTACGAACCCTAGTTTCAGACTCTTCTACGGTTACCCATCCTCGGTCTTCTTTGCCAGGT CGTCGTCCCCTGTTTGTTTGCTCACTCCACGACGAGTTCACGCCGCCGCCCCTTTCTCTCCTGAATTTCCATTTCTCAGGAGGAAGAGCGATGTGCCGCC GGGTAAGAATAACTGCATTGGCGAAAGTCAGGAGCAGGGGCTTTCCGATTGCATGGCGGAGGAGGGCGAGGGTGTGATTGGTGGTGGTGGTAAGCAAGGA GAAGCGGAGGTAAGCATCCAAGGATTGGAGAATCAGAGCTTCTGGAATCAAGTCAAGGAGATCGCGATGTTCACAGGGCCTGCTACGGGGCTTTGGTTGT GCGGACCGTTGATGAGTCTCATTGACACTGTGGTCATTGGTCAGGGAAGCTCCATTGAGCTTGCGGCTTTAGGACCTGGGACGGTGTTGTGTGACTATAT CTGTTATGTGTTCATGTTTCTCTCCGTTGCCACTTCGAATTTGGTTGCTACTGCCCTCGCCAGACAGGTTAGACCAGTAGCTCACGCTCTTGTTGCATTT CTTTCATTGGATAAATCAGAAGTGCAGCATCAAATATCTGTACTTCTGTTCGTTGCATTGGTGTGTGGGGTGTTTATGCTTTTCTTTACAAGATTCTGTG GTTCGTGGGCACTAACTGCCTTTGCAGGACCGAAGAACATTGATCTTATACCAGCAGCAAATACATATGTGCAGATTCGAGGCTTAGCATGGCCTGCTGT TCTTATTGGATGGGTTGCTCAAAGTGCTAGTCTTGGAATGAAAGATTCATGGGGCCCTTTGAAAGCTCTAGCAGTTTCTACTCTCGTAAATGGTGTCGGA GACGTAGTCCTGTGCAGTTTTTTAGGTTATGGTATAGCTGGGGCAGCATGGGCAACAATGGTGTCCCAGGTTGTTGCAGCCTTTATGATGATCAACTCAC TGAACAAGAAAGGCTACAATGCAACTTCGATTTCTGTCCCAAAATTAGATGATCTTCTGAGGATACTTGGAATTGCTGCTCCAGTGTTTATTACAATGAC ATCAAAGGTGGCATTTTATTCCCTCATTATATATTTTGCCACATCAATGGGTACACATGTGGTGGCAGCTAATCAGGTCATGAGTCAAGTGTTTGGCATG TGTGGCGTGTGGGGTGAACCTATCTCTCAAACTGCACAATCATTTATGCCCGAGCTAATATATGGGGCCAAGAGAGATTTGTCAAAGGCACGTAAACTGC TGAAATCGCTGGTTGTAATTGGAGCTGCACTTGGATTGACATCAGCAGCAATTGGCTCAGCTATTCCTTGGTTTTTCCCAAGAATCTTTACTCCGGACCC AAAAATAGTTCATGAGATTCACGGAGTTCTGCTTCCGTTCTTTATCGCATTGGCAGTGACCTCCTGCAATCACAGTCTAGAAGGAACATTGATGGCTGGA CGAGATCTTAAGTTCCTTAGCCTGTCAATGACCGGATGCTTCTCCTTGGGCGCTCTAATAGTGTTGGTCTCGAGCAGCAAAGGATTTGGTTTGCCAGGTT GCTGGTTTGCGCTTGTGGTGTTCCAATGGTCTCGGTTCGGCCTTGCTCTGCAGAGACTCGTCTCTCCCAGCGGCATACTCTTCTCGGACGACTTGAGTCG GTACAAAGAGAAGTTGAAAGCTACGTGA
AA sequence Show only first row Show all	>Lus10018080 pacid=23147867 polypeptide=Lus10018080 locus=Lus10018080.g ID=Lus10018080.BGIv1.0 annot-version=v1.0 MQLSTLHQSLPIPLTNPSFRLFYGYPSSVFFARSSSPVCLLTPRRVHAAAPFSPEFPFLRRKSDVPPGKNNCIGESQEQGLSDCMAEEGEGVIGGGGKQG EAEVSIQGLENQSFWNQVKEIAMFTGPATGLWLCGPLMSLIDTVVIGQGSSIELAALGPGTVLCDYICYVFMFLSVATSNLVATALARQVRPVAHALVAF LSLDKSEVQHQISVLLFVALVCGVFMLFFTRFCGSWALTAFAGPKNIDLIPAANTYVQIRGLAWPAVLIGWVAQSASLGMKDSWGPLKALAVSTLVNGVG DVVLCSFLGYGIAGAAWATMVSQVVAAFMMINSLNKKGYNATSISVPKLDDLLRILGIAAPVFITMTSKVAFYSLIIYFATSMGTHVVAANQVMSQVFGM CGVWGEPISQTAQSFMPELIYGAKRDLSKARKLLKSLVVIGAALGLTSAAIGSAIPWFFPRIFTPDPKIVHEIHGVLLPFFIALAVTSCNHSLEGTLMAG RDLKFLSLSMTGCFSLGALIVLVSSSKGFGLPGCWFALVVFQWSRFGLALQRLVSPSGILFSDDLSRYKEKLKAT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21340			MATE efflux family protein (.1...		Lus10018080 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Lus10042074 [exp]	1.0	0.9024
AT1G03070			Bax inhibitor-1 family protein...		Lus10004077 [exp]	1.7	0.8214
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10033610 [exp]	4.0	0.8001
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	4.0	0.8310
AT1G17120		CAT8	cationic amino acid transporte...		Lus10005574 [exp]	5.3	0.7860
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	10.4	0.8022
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10038902 [exp]	14.1	0.8064
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10014555 [exp]	14.3	0.8094
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	20.9	0.7716
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	21.0	0.7940

Compare expression of checked genes

Lus10018080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.