Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50230 719 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G24760 466 / 7e-157 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 444 / 1e-148 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 441 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 367 / 1e-118 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G38220 347 / 7e-112 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 324 / 9e-104 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 301 / 7e-95 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13610 301 / 7e-94 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 285 / 1e-88 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042076 [exp] 959 / 0 AT5G50230 767 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10042075 [exp] 691 / 0 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10022307 [exp] 479 / 2e-161 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10015925 [exp] 474 / 3e-159 AT5G50230 379 / 1e-127 Transducin/WD40 repeat-like superfamily protein (.1) Lus10000544 [exp] 420 / 5e-139 AT3G01690 488 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10035148 [exp] 392 / 3e-128 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 387 / 4e-126 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033575 [exp] 331 / 2e-105 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10017617 [exp] 325 / 1e-102 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087200 [exp] 803 / 0 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G090800 [exp] 531 / 0 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 522 / 8e-179 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G340000 [exp] 503 / 5e-171 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 397 / 3e-130 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 390 / 1e-127 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 384 / 3e-125 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 377 / 2e-122 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G117633 [exp] 360 / 2e-116 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 353 / 1e-113 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08614 [flax] [poplar] ATG16 Autophagy protein 16 (ATG16) CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10018081 pacid=23148005 polypeptide=Lus10018081 locus=Lus10018081.g ID=Lus10018081.BGIv1.0 annot-version=v1.0 ATGGGAGGGGTGACATCGTCCATGGCTGCCAAATTCGCTTTCTTCCCTCCAACCCCACCTTCCTACAAGCTAATTACCGACGATGCCACTGGTCTCCTCC TTCTCCACCAGTTCCCCCACCGCGAGAACGTCGACGTCCTCCGCCTCACCACTCGCCGCGGAAATGCGATCGCCGCCGTCTACGTCCGCTACCCTATGGC CACCACCACGCTCCTCTACTCCCACGGGAATGCCGCCGATATCGGCCAGATGTATGATTACTCTGGCTATGGACAGTCAACAGGAAAGCCTAGTGAGCAT AATACATATGCAGATGTTGAAGCTGCTTACAAGTGTCTTGAAGAGAACTATGGTGCGAGGCAGGAAAACATCATTCTCTATGGTCAATCTGTTGGGAGTG GGCCTACTCTTGATCTTGCAGCGCGTTTACCTCGACTAAGAGCTGTCGTCCTGCACAGTCCTATACTGTCAGGTTTAAGGGTCATGTATCCCGTGAAGCG TTCATATTGGTTCGACATCTACAAGAATATTGACAAGATTCCACAGGTGAAGTGCCCTGTACTTGTAATCCATGGAACTTCAGACGAAGTAGTTGATTTT TCCCACGGGAAGCAGCTGTGGGAACTCTGCCAAGAGAAATACGAGCCTCTATGGCTGAAAGGAGGAAACCACTGCGACCTGGAGTTGTATCCAGAATACC TCAGACATCTAAAGAAATTCATCATAACAGTTGAGAAATCACCCTCGCGGAGAAGCAGCGCCAGGAAAAGCACAGACTGTATCGAACAATCCAGGAAGAG CACGGATCGCTACGAGACAGCTAGGAAGAGCACGGATCGTTACGAGGCAGCTAGGAAGAGCACGGATCGTTACGAAGTCGCAAGGAAGAGCATCGATCGT TACGAGGTGGCAAGGAAGAGCACGGATCGAAGGGAGAAACCCAGGAAAAGCACAGACAGAGGCGAAAAGCTGAAATTCCACGAGTTCAAGTTCAGCAACG TTGAGAAAGTGGACAAGTTAAAGATCCCATTTGATCAGATGGAAAGGTCAAGGAGAAGTGTGGAGTACTATGAAAAGCCAAGGAGGAGCATTGATCATCA GCTAGAGAAAGGGAGGAAGAGTGTGGATTGGCTGGATAGGATCAGAGCTGCTGGAAGGGTGTCATCAAATGGAAAGGCACAGGAAATGGGGGATAGCAGG TACAAAATCACTTGGATTTCGAGGGAAGCTATTAAACACGCGATGAAGGCTCTGAGGAAGCGGCATTTGCTTGAAGAAGCTGCACATGCTCCTTCTTATG CCGCTCTTTCCAGGCCATTTGTCTCTCAGGCGAACAGTTGTCTACTCATCGCTGAGTTATTCCATTTGACGTCGATACTTCCCCTTGTACATAGATTTAG CTGTGGTGTGGTATCTTTTGATGTGGTTCAGGGCTCAGAATGGAAGGAGAAAGCAGAGAACTTGGAGTCTGAGCTTCAGCAATGCTACAAAGCTCAATCT CGGTTGTCTGAGCAACTTGTGGTTGAAGTAGCAGAGGCCAGAACAGCAAAAGCTTCACTTCAAGAGAAAGAAGCAACTATTGCCGATCTGCAGAAGGAAC TTACTGAATTAAGGGATGAATGCTCTCAACTAAAGGATGACTTGGTAGAGAAGATCAAAGGATTGGAACTAATAGTGAGCGAAAATCAAGAGCTGAGAAA CCAATTGACAGAGATGACCATTAAGGCTAAGGATGCTGAGGCGGAGAATAAGATGCTGGTTGATCGCTGGATGTTGCAAAAGATGCAAGACGCTGAGCGC CTCAATGAGGTCAATGCACTTTATGAAGAGATGGCTGATCGGCTAAAGGCAAGCGGCCTAGAGAAACTTGCTCGGCAACAAGTGGACGGAGTGGTTCGTC GAAGCGAGGAAGGAGCCGAGTATTTCGTCGAATCCACCATTCATTCTTCTTGCAAACACAAGATCACAGCTCATAACGATGGCTGCGGTTCTATATTATT CGAATTCAACTCAACAAAACTAGTTACTGGCGGACATGACAAGTCAATCAAGATGTGGGATACAAACACAGGAGCGCTAACTCGAACTCTACAGGGCTGC CTGGGATCGGTTCTTGATCTTTCAATCACACACGACAATAAATCAGTGGTTGCAGCGAGCAGCTCCAACAACCTATTCGTCTGGGACGTAACCTCGGGTC GCCAGCATCACACTTTGACCGGCCACGTGGACAAAGTCTGTGCCGTAGACGTCAGCAAAGTCTCAAGCCGCCATGTCGTAAGCTCTGCTTACGACCGTAC GATCAAAGTGTGGGATCTGCAGAAAGGCTACTGCACGAACACAATCATGTTCCCCAGCAACTGCAACACTGTTTGCTTCGGAATGGACGGACAGACGATT TGTTCAGGCCATGTTGACGGGAATCTCCGCCTTTGGGACATTCAAACGGGGAAGCTTCTCAGTGAAGTGGCTGCTCATTCTCTTGCAATCACGTCTTTGT CCTTGTCGCGCAATGGAAGCACTATACTAACGAGCGGGAGAGACAACCTTCACAACATATTTGACATGCGGTCCCTCGAAGTTTGTAGCACGCTGCGAGC GAGTGGGAACCGGATGGCGACGAATTGGAGCCGGTCGTGTCTGAGTCCTGATGACAAGTATGTTGCTGCTGGTTCGGCGGACGGTTCGGTGTACATTTGG TCGGTGGCCAAAGGTGATATAGTGAGCACACTTAAGGAAGATACGAGTCCAGTTCTGTGCTGTTCGTGGAGTGGGCTTGGGAAACCGTTGGCATCTGCGC ATAAAAGTGGAGTCGTTTGTATCTGGAAATGA
AA sequence Show only first row Show all	>Lus10018081 pacid=23148005 polypeptide=Lus10018081 locus=Lus10018081.g ID=Lus10018081.BGIv1.0 annot-version=v1.0 MGGVTSSMAAKFAFFPPTPPSYKLITDDATGLLLLHQFPHRENVDVLRLTTRRGNAIAAVYVRYPMATTTLLYSHGNAADIGQMYDYSGYGQSTGKPSEH NTYADVEAAYKCLEENYGARQENIILYGQSVGSGPTLDLAARLPRLRAVVLHSPILSGLRVMYPVKRSYWFDIYKNIDKIPQVKCPVLVIHGTSDEVVDF SHGKQLWELCQEKYEPLWLKGGNHCDLELYPEYLRHLKKFIITVEKSPSRRSSARKSTDCIEQSRKSTDRYETARKSTDRYEAARKSTDRYEVARKSIDR YEVARKSTDRREKPRKSTDRGEKLKFHEFKFSNVEKVDKLKIPFDQMERSRRSVEYYEKPRRSIDHQLEKGRKSVDWLDRIRAAGRVSSNGKAQEMGDSR YKITWISREAIKHAMKALRKRHLLEEAAHAPSYAALSRPFVSQANSCLLIAELFHLTSILPLVHRFSCGVVSFDVVQGSEWKEKAENLESELQQCYKAQS RLSEQLVVEVAEARTAKASLQEKEATIADLQKELTELRDECSQLKDDLVEKIKGLELIVSENQELRNQLTEMTIKAKDAEAENKMLVDRWMLQKMQDAER LNEVNALYEEMADRLKASGLEKLARQQVDGVVRRSEEGAEYFVESTIHSSCKHKITAHNDGCGSILFEFNSTKLVTGGHDKSIKMWDTNTGALTRTLQGC LGSVLDLSITHDNKSVVAASSSNNLFVWDVTSGRQHHTLTGHVDKVCAVDVSKVSSRHVVSSAYDRTIKVWDLQKGYCTNTIMFPSNCNTVCFGMDGQTI CSGHVDGNLRLWDIQTGKLLSEVAAHSLAITSLSLSRNGSTILTSGRDNLHNIFDMRSLEVCSTLRASGNRMATNWSRSCLSPDDKYVAAGSADGSVYIW SVAKGDIVSTLKEDTSPVLCCSWSGLGKPLASAHKSGVVCIWK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50230			Transducin/WD40 repeat-like su...		Lus10018081 [exp]	0	1
AT3G05500			Rubber elongation factor prote...		Lus10020648 [exp]	2.2	0.9165
AT1G12640			MBOAT (membrane bound O-acyl t...		Lus10006325 [exp]	4.6	0.9044
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10030323 [exp]	4.7	0.8778
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	5.1	0.8685
AT1G48900			Signal recognition particle, S...		Lus10016213 [exp]	6.0	0.9127
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000615 [exp]	16.7	0.8538
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10038531 [exp]	19.1	0.9016
AT3G23090			TPX2 (targeting protein for Xk...		Lus10022213 [exp]	19.4	0.8580
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	21.5	0.8847
AT3G26340			N-terminal nucleophile aminohy...		Lus10011369 [exp]	23.3	0.9033

Compare expression of checked genes

Lus10018081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.