Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10710 89 / 2e-20 PHS1 poor homologous synapsis 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042079 [exp] 342 / 3e-121 AT1G10710 89 / 3e-21 poor homologous synapsis 1 (.1.2) Lus10004624 [exp] 77 / 3e-16 AT1G10710 170 / 4e-50 poor homologous synapsis 1 (.1.2) Lus10026691 [exp] 69 / 3e-14 AT1G10710 133 / 4e-38 poor homologous synapsis 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044800 [exp] 102 / 1e-25 AT1G10710 201 / 2e-62 poor homologous synapsis 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018084 pacid=23147932 polypeptide=Lus10018084 locus=Lus10018084.g ID=Lus10018084.BGIv1.0 annot-version=v1.0 ATGGCGGGAATCAGTGAGCTGCCTCTTCTAAACCCTAACAGTGGCACGAACAACACAGCTCAGACTCAGTGGTTGATACACTATGCTCGCTTTTTCAACC TCCCTGCTCTCCAACCGACCTGCCCCGGTCTCGTCCCTCTGAGCTCCAGGTGGCGAAACAACAGTTCTTCCGGAACATGGCTCCCTTCTTCGTCTATGGT GTCTCTGCAACTCCTAAGGCAACCGATTGACGCCGATGGCCTCCGCCTCGTCCTCCTCGTCTCTTCTCAGGACAAAATCTACGAAGAACACTATATCTCG AAGCTGCATTTCGCTTGGCCTCAGATTTCGTGCCTGGAAGCAACTTCTCTTAGAGGCAGCAGAGCTGTATTTGCAAGTTATGGAGACGGTCTAGGCCAGG CAAGCTTTCTAACCTCTACAAGCTTGAATGGCATTGGAAATATAGGGATTGAAAGTTGCAGGTTTGTATCAGAACTCCCATCTACATCTCAGTTCATCTC TCCAAATGGATCAGGTTACAGTACTTCTCAAGGAATGAGCAATGTCTATCCTATTCCAAACTATCGGCCACAAGTGCAGCTTCAGCCAAACTACAGATTC ACACAATCTAACGAGAATTATCCCACTCGTCATTCAGAAACTAGAACCATCCCAGTGCCTCCGAACACCGTTCCTCTTATTCCTGACCTTAACAGTGTAG ACATCAAGATGTTCCCCATTCGATCTAATTGTCGCTGA
AA sequence Show only first row Show all	>Lus10018084 pacid=23147932 polypeptide=Lus10018084 locus=Lus10018084.g ID=Lus10018084.BGIv1.0 annot-version=v1.0 MAGISELPLLNPNSGTNNTAQTQWLIHYARFFNLPALQPTCPGLVPLSSRWRNNSSSGTWLPSSSMVSLQLLRQPIDADGLRLVLLVSSQDKIYEEHYIS KLHFAWPQISCLEATSLRGSRAVFASYGDGLGQASFLTSTSLNGIGNIGIESCRFVSELPSTSQFISPNGSGYSTSQGMSNVYPIPNYRPQVQLQPNYRF TQSNENYPTRHSETRTIPVPPNTVPLIPDLNSVDIKMFPIRSNCR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10018084 [exp]	0	1
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	2.6	0.9138
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	4.5	0.9163
AT4G19420			Pectinacetylesterase family pr...		Lus10037269 [exp]	4.7	0.9312
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10003269 [exp]	6.8	0.9359
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	8.8	0.9278
					Lus10028391 [exp]	11.2	0.9046
AT5G08320			unknown protein		Lus10017382 [exp]	14.6	0.8722
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10014324 [exp]	15.6	0.8742
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10018686 [exp]	21.1	0.8648
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10028390 [exp]	21.9	0.8959

Compare expression of checked genes

Lus10018084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.