Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24800 910 / 0 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT5G63190 878 / 0 MA3 domain-containing protein (.1.2) AT3G48390 807 / 0 MA3 domain-containing protein (.1) AT1G22730 514 / 4e-174 MA3 domain-containing protein (.1) AT5G57870 57 / 6e-08 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT4G30680 52 / 5e-07 Initiation factor eIF-4 gamma, MA3 (.1) AT2G24050 49 / 9e-06 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042080 [exp] 1187 / 0 AT4G24800 974 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Lus10011324 [exp] 559 / 0 AT1G22730 816 / 0.0 MA3 domain-containing protein (.1) Lus10012205 [exp] 405 / 3e-135 AT1G22730 560 / 0.0 MA3 domain-containing protein (.1) Lus10012204 [exp] 97 / 7e-23 AT1G22730 117 / 1e-30 MA3 domain-containing protein (.1) Lus10010782 [exp] 56 / 1e-07 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035812 [exp] 52 / 1e-07 AT2G24050 228 / 3e-71 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10022168 [exp] 54 / 6e-07 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10036594 [exp] 52 / 1e-06 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G088300 [exp] 1013 / 0 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Potri.012G091900 [exp] 1012 / 0 AT5G63190 1022 / 0.0 MA3 domain-containing protein (.1.2) Potri.005G199200 [exp] 601 / 0 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1) Potri.002G061800 [exp] 72 / 1e-15 AT1G22730 74 / 4e-17 MA3 domain-containing protein (.1) Potri.018G104100 [exp] 60 / 5e-09 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G182100 [exp] 57 / 3e-08 AT5G57870 884 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G265300 [exp] 55 / 2e-07 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G017600 [exp] 54 / 4e-07 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.014G052600 [exp] 44 / 0.0004 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02847 [flax] [poplar] MA3 MA3 domain
Representative CDS sequence Show only first row Show all	>Lus10018085 pacid=23147980 polypeptide=Lus10018085 locus=Lus10018085.g ID=Lus10018085.BGIv1.0 annot-version=v1.0 ATGGCGTCAAATGAGGGATTTCTAACTGATGGCCAGAGAGAAATGATGAAACTCGCCTGTGAGAACGCAGACAGCCCATCTTCACCTCCTAAAATCTTGT CATCATCCCCTAAATCCCCTTCAGGGTTGCGTCCTGAACACTTTGTGAAAATTCACGGTCCTAGCAAAGCACAAGCAGGCGGGGCTGGTGGTGGTGGTGG GAGGCATGTTAAGAGATCACATTCTGGCAAGTACGGGAGAGCGAAGAAGGATGGTGCTGGTGGGAAGGGAACATGGGGAAAGCTCCTTGATACAGAAGAA GATTGCCATATTGATCGTAATGATCCTAATTATGATAGTGGAGAGGAACCCTATAAGCTCGTTGAGGCAACTCTATCTGATCCCTTGGATGATTACAAGA AAGCTGTTGCTTCCATCATAGAAGAGTACTTCAGTACTGGGGATGTAGAAGTTGCAGCATCAGACCTAAGAGAACTTGGAGCCAGTCAATATCACCCATA CTTTATTAAGAGACTCATCTCCATGGCCTTGGATAGACATGACAAGGAGAAAGAAATGGCTTCTGTCTTACTATCTTCACTATATGCTGATGTTATAACT CCATCACAAATCAGTTATGGTTTCGTCATACTTCTTGAATCTGCTGATGACCTGGTTGTAGATATCTTGGATGCAGTAGACCTCCTTGCTTTATTTGTGG CACGGGCTGTGGTAGATGAAATCCTTTCACCAGCATTTCTTATCAGAGCAAAGAAAACTTTTCCTGAAACATCAAAGGGATATCAGATTCTCCTGACAGC TGAAAAAAGCCACCTTTCAGCTCCACATCATGCTGAACTTCTGGAAAGGAGATGGGGCGGTAGTACCCGCACCACTGTTGAAGAGGTGAAGAAGAAGATT GCGAGTCTTTTGAGGGAATATGTTGAGAGTGGGCAAGCTGTCGATGCCTGCAAATCTATAAGGGAATTAGGGGTTACATTTTTCCATCATGAGGTTGTGA AGAGAGCTTTAGTTCTTGCAATGGAGATCCAAACTGCCGAACCGCTTATATTAAAGCTGCTAAAGGAAGCCACTGAGGAAGGCCTTATAAGTCCAAGTCA GATGGTCAAAGGTTTTGCTCGCTTGGCTGAGAGCCTCGACGACCTTGCACTTGACATCCCATCTGCTAGAGTCCTTTTCGAAGCAATTGTCTCCAAAGCT ACTGCAGAAGGGTGGTTGGATGGTTCGTTCTCAAATGGTTCAGCTGAAGATGGCCAGCTAAGGGATGAAGATGTGAAGTTGAAACGTTACAAAGAGGAGG TTGTCACTATGATTCACGAGTACTTCCACTCAGATGATATTCCGGAGCTAATCAGGAGTTTGCTTGATCTGGGATTGCGTCAGTATAACCCAATTTTCTT GAAGAAGCTTATAACCCTTGCCATGGACAGGAAAAACAGGGAGAAGGAAATGGCATCTGTTCTGCTCTCAGCTCTTCACATAGAGATCTTCTCAACCGAA GACATAGTTGACGGTTTCGTGATGCTTTTGGAATCTGCCGAGGATACAGCTCTGGACATACTGGACGCTTCAAACGAGCTTGCCTTATTTCTAGCTCGAG CTGTGATCGATGACGTCCTGGCTCCATTAAATTTCGAGGAAATCGGAAGCCAGCTGCCGCCAAACTGCAGCGGGAGCGAGACCGTACGCATGGCTCGATC TCTGATCACTGCTCGACACGCTGGGGAGAGGCTCTTGAGGTGTTGGGGAGGTGGGACCGGCTGGGCGGTCGAAGATGCAAAGGACAAGATCATGAAGCTG TTGGAAGAGTACGAAAGCAGTGGTGGAGTAGGCGAAGCCTGCCAATGCATTCGTGACCTTGGAATGCCGTTCTTCAACCACGAGGTGGTGAAGAAGGCAC TGACAATGGCGATGGAGAAGAAGAACGACAAGATGCTGGATCTGCTGCAGGAATGTTTCAATGAAGGGCTGATCACCACCAACCAAATGACGAAAGGGTT CACTCGTATCAAGGAAGGGCTGGATGATCTTGCTCTCGACATACCAAACGCGAAGGAGAAATATGCTTTCTACGCTGAGTATGCTCAGAAGAAGGGCTGG CTCCAGGCATCCTTCTAG
AA sequence Show only first row Show all	>Lus10018085 pacid=23147980 polypeptide=Lus10018085 locus=Lus10018085.g ID=Lus10018085.BGIv1.0 annot-version=v1.0 MASNEGFLTDGQREMMKLACENADSPSSPPKILSSSPKSPSGLRPEHFVKIHGPSKAQAGGAGGGGGRHVKRSHSGKYGRAKKDGAGGKGTWGKLLDTEE DCHIDRNDPNYDSGEEPYKLVEATLSDPLDDYKKAVASIIEEYFSTGDVEVAASDLRELGASQYHPYFIKRLISMALDRHDKEKEMASVLLSSLYADVIT PSQISYGFVILLESADDLVVDILDAVDLLALFVARAVVDEILSPAFLIRAKKTFPETSKGYQILLTAEKSHLSAPHHAELLERRWGGSTRTTVEEVKKKI ASLLREYVESGQAVDACKSIRELGVTFFHHEVVKRALVLAMEIQTAEPLILKLLKEATEEGLISPSQMVKGFARLAESLDDLALDIPSARVLFEAIVSKA TAEGWLDGSFSNGSAEDGQLRDEDVKLKRYKEEVVTMIHEYFHSDDIPELIRSLLDLGLRQYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTE DIVDGFVMLLESAEDTALDILDASNELALFLARAVIDDVLAPLNFEEIGSQLPPNCSGSETVRMARSLITARHAGERLLRCWGGGTGWAVEDAKDKIMKL LEEYESSGGVGEACQCIRDLGMPFFNHEVVKKALTMAMEKKNDKMLDLLQECFNEGLITTNQMTKGFTRIKEGLDDLALDIPNAKEKYAFYAEYAQKKGW LQASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	0	1
AT5G24490			30S ribosomal protein, putativ...		Lus10032935 [exp]	1.4	0.9556
AT1G03090		MCCA	methylcrotonyl-CoA carboxylase...		Lus10042623 [exp]	1.7	0.9653
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Lus10026983 [exp]	2.4	0.9546
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030853 [exp]	4.5	0.9483
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10034316 [exp]	4.5	0.8859
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	4.5	0.9544
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Lus10023493 [exp]	6.0	0.9430
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10019074 [exp]	6.5	0.9419
AT1G60140		ATTPS10	TREHALOSE PHOSPHATE SYNTHASE 1...		Lus10030635 [exp]	7.1	0.9028
AT3G53630			unknown protein		Lus10024421 [exp]	7.4	0.9217

Compare expression of checked genes

Lus10018085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.