Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50280 337 / 1e-110 EMB1006 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 117 / 6e-29 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G62720 115 / 7e-29 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G11690 115 / 2e-28 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G31850 114 / 6e-28 PGR3 proton gradient regulation 3 (.1) AT5G65560 114 / 1e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 112 / 3e-27 GUN1 genomes uncoupled 1 (.1) AT1G63070 111 / 5e-27 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G39710 111 / 8e-27 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 110 / 9e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042081 [exp] 646 / 0 AT5G50280 648 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 114 / 6e-28 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016009 [exp] 110 / 1e-26 AT5G42310 921 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015530 [exp] 108 / 7e-26 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000909 [exp] 107 / 1e-25 AT1G74580 270 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012268 [exp] 107 / 2e-25 AT5G42310 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10023650 [exp] 107 / 2e-25 AT5G21222 623 / 0.0 protein kinase family protein (.1) Lus10033127 [exp] 106 / 5e-25 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10021989 [exp] 105 / 6e-25 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G091800 [exp] 363 / 6e-121 AT5G50280 845 / 0.0 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G021200 [exp] 123 / 3e-31 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.014G090400 [exp] 121 / 2e-30 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 115 / 2e-28 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242500 [exp] 115 / 2e-28 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G010900 [exp] 115 / 3e-28 AT5G42310 939 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G271400 [exp] 113 / 1e-27 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G092100 [exp] 113 / 2e-27 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G242200 [exp] 112 / 2e-27 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G250200 [exp] 112 / 2e-27 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018086 pacid=23147951 polypeptide=Lus10018086 locus=Lus10018086.g ID=Lus10018086.BGIv1.0 annot-version=v1.0 ATGAGTTGCTTGTACTTCTACGAATGGATGAGTACGCAGGATCCGCCTGCTATCACGCCTCGAGCTCCCACTGTTCTCTTCCCCTTACTCGGCAAGGCTG GATTGGGTGATGAAATGATGTCTCTCTTCCAAAAATTGCCCCGGAACGATGAATTCAGAGACGGCCATGTCTTCAATGCTGCTATGTCCGGCTTTCTCTA CTGCGGCAGGTATGACGATGCACGCAAGGTGAACGAGAAAATGCCAGAAACCGATATCCATCCTAGTCACGTCACTTGTTCGATAATGATGTCTGTAATG AAAAAGCAAGGCCGTTTCCAGAAGGAAGCGTCGGATTTCTTTCGGACGACGTTCAGGAATGGAGTCGTATGGAATTCCGGAAGCCTCATCGGCTTAATCA AATCGCTCTGCGATGCCGGTCTGAAGGAGCAAGCCGCCAGGATCCTATCCGAAATTGTGAAGGAAGGAGAAGCTGCTCCTCACGTGGTCGTGTACGACGT GTTAATCAAAGCTTATTTCAACTCCGACCGAGCTGGAAAAGCCGAAGCTCTGTTCGCCGAGATGAAGGCACTAGGCGTTGAGCCAACGACTGCAACTTAC AACTTGCTTATGAATGCATACAGCGTAAGGATGCAGCCCGAAATGGTTGAGAAGCTGCTTAAAGAGATGCAGGATCGAGGTTTGAAACAGAATCCTAAAT CATTTACGTCGTTAATTCGTGCATATGGGAGCCAGAAGAAGTGCGAATTGGCTGCGGATGCATTCTTGAGAATGAAGAGACTAGGCGTTGAACCTCATGC GCATAACTACTGTGCTCTCATCCATGCTTATTCGGCCAGCGGGCAGTATGAGCAGGCTTATGCAGTGTTTGAAGATATGCAGCTTGAAGGAGTAATCCCT AGTTCGGATACTTACACAGCATTGCTGGATGCGATCAGGCATGCCGGTGACACTGATAAGTTGATGAAGATATGA
AA sequence Show only first row Show all	>Lus10018086 pacid=23147951 polypeptide=Lus10018086 locus=Lus10018086.g ID=Lus10018086.BGIv1.0 annot-version=v1.0 MSCLYFYEWMSTQDPPAITPRAPTVLFPLLGKAGLGDEMMSLFQKLPRNDEFRDGHVFNAAMSGFLYCGRYDDARKVNEKMPETDIHPSHVTCSIMMSVM KKQGRFQKEASDFFRTTFRNGVVWNSGSLIGLIKSLCDAGLKEQAARILSEIVKEGEAAPHVVVYDVLIKAYFNSDRAGKAEALFAEMKALGVEPTTATY NLLMNAYSVRMQPEMVEKLLKEMQDRGLKQNPKSFTSLIRAYGSQKKCELAADAFLRMKRLGVEPHAHNYCALIHAYSASGQYEQAYAVFEDMQLEGVIP SSDTYTALLDAIRHAGDTDKLMKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Lus10018086 [exp]	0	1
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10035475 [exp]	3.2	0.8570
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031564 [exp]	5.7	0.8768
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10006927 [exp]	8.2	0.8627
AT5G15710			Galactose oxidase/kelch repeat...		Lus10035147 [exp]	12.1	0.8046
AT2G20830			transferases;folic acid bindin...		Lus10018557 [exp]	12.6	0.7946
					Lus10040408 [exp]	15.4	0.7815
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10014672 [exp]	16.4	0.8739
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10022279 [exp]	16.5	0.8337
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10010385 [exp]	16.8	0.8715
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	20.1	0.8530

Compare expression of checked genes

Lus10018086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.