Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48360 340 / 8e-116 ATBT2, BT2 BTB and TAZ domain protein 2 (.1) AT5G63160 339 / 1e-115 BT1 BTB and TAZ domain protein 1 (.1) AT4G37610 205 / 5e-63 BT5 BTB and TAZ domain protein 5 (.1) AT5G67480 199 / 2e-60 ATBT4, BT4 BTB and TAZ domain protein 4 (.1.2) AT1G05690 197 / 7e-60 BT3 BTB and TAZ domain protein 3 (.1) AT1G79000 56 / 3e-08 ATHAC1, ATHPCAT2, PCAT2, HAC1 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) AT1G16710 52 / 6e-07 HAC12 histone acetyltransferase of the CBP family 12 (.1.2) AT3G12980 51 / 9e-07 HAC5 ,ATHPCAT4 histone acetyltransferase of the CBP family 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042082 [exp] 550 / 0 AT3G48360 388 / 1e-134 BTB and TAZ domain protein 2 (.1) Lus10013670 [exp] 452 / 7e-160 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10033038 [exp] 228 / 4e-74 AT5G63160 184 / 5e-57 BTB and TAZ domain protein 1 (.1) Lus10019299 [exp] 230 / 2e-72 AT5G67480 487 / 7e-173 BTB and TAZ domain protein 4 (.1.2) Lus10011523 [exp] 218 / 1e-67 AT5G67480 482 / 6e-171 BTB and TAZ domain protein 4 (.1.2) Lus10025196 [exp] 213 / 4e-66 AT5G67480 425 / 9e-149 BTB and TAZ domain protein 4 (.1.2) Lus10034780 [exp] 57 / 1e-08 AT1G79000 1715 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033321 [exp] 57 / 1e-08 AT1G79000 1965 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Lus10033319 [exp] 56 / 4e-08 AT1G79000 1952 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087700 [exp] 421 / 1e-147 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.012G091400 [exp] 415 / 3e-145 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.007G140400 [exp] 239 / 1e-75 AT1G05690 407 / 3e-141 BTB and TAZ domain protein 3 (.1) Potri.017G009700 [exp] 239 / 1e-75 AT1G05690 451 / 9e-159 BTB and TAZ domain protein 3 (.1) Potri.007G055100 [exp] 201 / 5e-61 AT5G67480 438 / 2e-153 BTB and TAZ domain protein 4 (.1.2) Potri.014G000500 [exp] 56 / 2e-08 AT1G79000 1829 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.007G003400 [exp] 56 / 2e-08 AT1G79000 1847 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2) Potri.004G104201 [exp] 55 / 7e-08 AT1G79000 860 / 0.0 ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, histone acetyltransferase of the CBP family 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02135 [flax] [poplar] zf-TAZ TAZ zinc finger CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10018087 pacid=23147909 polypeptide=Lus10018087 locus=Lus10018087.g ID=Lus10018087.BGIv1.0 annot-version=v1.0 ATGGCGGAGCAACCTCACTATACATCACCACCGCCACCCACCTCCGCCGCCGACCATTTCCAACTCGCCGGAGATGACTCTTCCCCTGACTCACCTACGC CCGACGTCCAGATCCTCACCTCCGGCGGCCTCCGCATACCGGCGCACGGCACTGTTCTGGCCATGGTGTCACCAGTTCTGGGTAATATCATTGACAATCC GCCGAAGCACCGGAGCTCCGAGCGGGTCATTCGAATCCTAGGCGTCCCTTGTGCCGCCGTCACCGTCTTCATCCGATTCCTCTACTCCTCACGGTGCACA GAAGTTGATATGAAGAAGTATGGGATCCATCTGCTGACATTGTCACACGTCTACTTGATTCCTCAGTTGAAGAAGCTAAGCACCATGGCTGTGATCAATA ACTTGAGCGTTGATAATGTAGTGGATGTTCTCCAATTGTCAAGACTCTGCGATGCGCCTGAACTTTACCTCAAGTGCGTGAAGTTAGTATCCAAAAGCTT CAAGGACGTGGAGAACACAGAAGGCTGGCAGTTCATCCAAGACCACGATCCCTGGCTGGAACTCGAGATCCTTCAGTTCATTGACGAATCCGAATCGAGG AAGAAGAGAAGTAAAAGGCAGAAGGAAGAGCGGAGGTTATACATGGAGCTAGGCGAGGCGATGGATTGCTTGGAACACATATGTACAGAAGGGTGTACAA GTGTCGGCCCGTGTGATGCTGAGCCTAATACAAGGAAAGGGAGACCTTGCAGCAAGTTCTCCACTTGTCAAGGCGTCCAGCTTTTGATCAAGCACTTCGC TACCTGCAAGAAGCGGGTTAATGGAGGGTGTTCCCGTTGTAAAAGGATGTGGCAGCTCTTGAGACTTCACGCTTCCATCTGTGATCAACACGATCCTTGC AAAGTCCCTCTTTGCAGGCAATTCAAGTTGAAAATGCAGCAAGAGAAGAAGGGCGGCGGGGACACTTTGTGGAAGCTGCTAGTGCGCAAGGTAGTTTCAG CCAGGGTAATGGCTTCTATATCCCTTGCCAAGAAGAAGCGAGAACAGGAATCATAG
AA sequence Show only first row Show all	>Lus10018087 pacid=23147909 polypeptide=Lus10018087 locus=Lus10018087.g ID=Lus10018087.BGIv1.0 annot-version=v1.0 MAEQPHYTSPPPPTSAADHFQLAGDDSSPDSPTPDVQILTSGGLRIPAHGTVLAMVSPVLGNIIDNPPKHRSSERVIRILGVPCAAVTVFIRFLYSSRCT EVDMKKYGIHLLTLSHVYLIPQLKKLSTMAVINNLSVDNVVDVLQLSRLCDAPELYLKCVKLVSKSFKDVENTEGWQFIQDHDPWLELEILQFIDESESR KKRSKRQKEERRLYMELGEAMDCLEHICTEGCTSVGPCDAEPNTRKGRPCSKFSTCQGVQLLIKHFATCKKRVNGGCSRCKRMWQLLRLHASICDQHDPC KVPLCRQFKLKMQQEKKGGGDTLWKLLVRKVVSARVMASISLAKKKREQES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10018087 [exp]	0	1
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10036862 [exp]	2.8	0.8749
AT5G61340			unknown protein		Lus10003483 [exp]	6.6	0.8502
AT1G74320			Protein kinase superfamily pro...		Lus10008675 [exp]	9.5	0.8314
AT3G21690			MATE efflux family protein (.1...		Lus10020049 [exp]	10.6	0.8218
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	13.0	0.8533
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10017882 [exp]	13.5	0.8378
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	15.0	0.8536
AT2G23110			Late embryogenesis abundant pr...		Lus10029709 [exp]	15.1	0.8749
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033078 [exp]	16.3	0.7687
AT2G25680		MOT1	molybdate transporter 1 (.1)		Lus10019046 [exp]	17.8	0.7403

Compare expression of checked genes

Lus10018087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.