Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60780 629 / 0 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 604 / 0 Clathrin adaptor complexes medium subunit family protein (.1) AT4G24670 380 / 1e-124 TAR2 tryptophan aminotransferase related 2 (.1.2) AT1G23320 321 / 2e-102 TAR1 tryptophan aminotransferase related 1 (.1) AT5G46630 320 / 1e-101 Clathrin adaptor complexes medium subunit family protein (.1.2) AT1G70560 296 / 7e-93 CKRC1, WEI8, TAA1, sav3 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) AT4G24550 218 / 9e-63 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT1G34040 213 / 7e-61 ATMEPCT Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G34060 205 / 4e-58 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G56590 154 / 2e-40 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042083 [exp] 701 / 0 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10004626 [exp] 640 / 0 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 629 / 0 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10039944 [exp] 505 / 2e-173 AT4G24670 489 / 5e-172 tryptophan aminotransferase related 2 (.1.2) Lus10027678 [exp] 475 / 9e-163 AT4G24670 449 / 7e-158 tryptophan aminotransferase related 2 (.1.2) Lus10000107 [exp] 462 / 1e-157 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10036846 [exp] 311 / 2e-98 AT1G70560 415 / 4e-144 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Lus10040086 [exp] 311 / 8e-98 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10006199 [exp] 306 / 5e-97 AT1G70560 405 / 6e-141 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044700 [exp] 632 / 0 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.008G187600 [exp] 630 / 0 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.T125108 [exp] 425 / 8e-142 AT4G24670 487 / 7e-171 tryptophan aminotransferase related 2 (.1.2) Potri.012G083300 [exp] 424 / 2e-141 AT4G24670 489 / 1e-171 tryptophan aminotransferase related 2 (.1.2) Potri.008G187800 [exp] 349 / 4e-113 AT1G70560 477 / 1e-168 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.010G044500 [exp] 345 / 2e-111 AT1G70560 504 / 4e-179 WEAK ETHYLENE INSENSITIVE 8, SHADE AVOIDANCE 3, cytokinin induced root curling 1, tryptophan aminotransferase of Arabidopsis 1 (.1) Potri.001G143800 [exp] 311 / 6e-98 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.003G090800 [exp] 310 / 2e-97 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.002G064000 [exp] 209 / 7e-60 AT1G34060 514 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G105100 [exp] 209 / 1e-59 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF04864 [flax] [poplar] Alliinase_C Allinase CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10018088 pacid=23147915 polypeptide=Lus10018088 locus=Lus10018088.g ID=Lus10018088.BGIv1.0 annot-version=v1.0 ATGATAATGGGAGGAGCTTATTTCAATGGTTTATCGGCCACTACTCACCTTCTGGTTTTGACGTTAACTCTGAACGTCAGCCTGCTCATCATTGCGTCCA GCCACCGCAATGAGGACGGTGCTTCTCCGGTGGCCGCCGTATCACCTCTCATAACCTCTCTGTCTCAGGTGGAAGATGACGGCAGAATCATCAACCTTGA CCAAGGAGACCCGACAATGTACGAGAAATTCTGGAAGGAAACAGCGGGGGACAGAGCCACCGTAGTGATCCCAAGTTGGGAGTTCACTAGCTACTTCTCC GACTCCGGCAGCATCTGCTGGTTCCTCGAACCACAGCTAGCTCGCCAGATTGTCAGGCTCCACCAGGGCGTTGGGGAAGCTGTCACCCTGTTTCTAGCTG TCCTCTACGCTCTCTGCCCGCCAAATGCCACGAACCCAGCTAGCGTCGTTTCCATGGCCCCGTACTACTCTTCGTACCCTACGACGATCGATAGCCTGAG ATCGGGCCTATTCAGATGGGCCGGTGACGCCTCCAAATTCAAAGCCCACAGGCCTTTCGTGGAATTCGTAACTTCGCCCAACAACCCAGACGGGTTTACT CGACACCCGGTCGTGAACCGAACCGGAGGGTTTCTAGTTTACGATCTTGCTTACTACTGGCCGCAATACGCCCCCGTCACTTCCCCTTCCGATCACGACA TCACCCTTTTCACCGTCTCCAAATCCACAGGCCACGCAGGCATCCGGATCGGATGGGCGCTGGTGAAGGACGCTGAGGTGGCGAGGAAAATGACGAAATT CATAGAGCTGAGCAGCCTGGGGGTGTCCAAGGACTCGCAGCTGAGAGCAACCAAGATAATGGAGGTCGTTTCGGATGCTGAGCAGGAATCCAGGCAGCGG GCGTCAGCTGATTCATCGCTGTTCGAGTTCGGGTTGAAGAACATGAAACGGCGGGGCGAGGTGAAGAACATGAGACTGCGGTGGAAGATGCTGAGGGCGG CGGTGAAAAAGAGCGGAGGAATGTTCAGCTTGCCGGATTACAGATCGGAGTACTGCCGTTTTAACGGCCAGTCCATGTCAAACCAACCCGCTTTTGCGTG GATGAAGTGCGAGGGAGATGTTGAAGACTGCGAAGAGGTGTTCAAGAAGAATAAGATACTGACGAGGAGTGGGGTCAATTTCGGGGCGAGTCGGAAATAT GCGCCGCCTCGGCGCTCTTCCTTCTTGACATCAAAGGCCGTATCCTCATTTGGCGAGACTACCGCGGCCACGTCACCGCCTCCCAGGCCGAGCGCTTCTT CTCCACGCTCCTCTCATCGCGTAGTTCAAGTTTTCAAGCATTACTTTGAGGAGCTAGAGGAGGAATCTCTCAGAGACAATTTTGTCGTTGTGTATGAGTT ACTTGATGAAATCATGGACTTTGGGTTCCCACAATTTACTGAGGCGAAGATTCTGAGCGAGTTCATCAAGACTGATGCATACAGGTTGGAAGTTGCACAG AGGCCACCTGTGGCTGTCACTAACGCTGTTTCCTGGCGTAGTGAAGGGATAAAGTACAAAAAGAACGAAGTGTTCCTTGATGTAGTGGAAAGTGTGAATA TTCTTGTTAACAGCAATGGGCAAATAATCCGGTCGGATGTCGTTGGGGCGTTAAAGATGAGAACATACTTGAGTGGCATGCCTGAGTGCAAGCTTGGCCT AAATGACAGATTGCTTATGGAGTCTCAAGGTCGAGCAACCAAAGCAAAAGCCATTGATCTTGATGATATCAAATTCCATCAATGTGTTCGTTTGGCTCGA TTCGATAACGATAGGACGATATCCTTCATACCTCCAGATGGCTCTTTTGATCTAATGACGTATAGGCTCGCCACCCAGGTGAGACCTCTTATTTGGGTAG AAGCTCAAGTCGAGAGGCATTCCAGAAGCCGAATCGAATTAATGGTCAAAGCTCGCAGCCAGTACAAAGAGCGAAGCACTGCAACGAACGTTGAGATTGT ATTGCCAGTTCCATCTGATGCTACGAATCCCAACGTCAGGACATCGATGGGTTCTGCTTTGTACGCTCCGGAGAACGATGCACTCGTCTGGAAGATCAGC TCATTCCCTGGCAGTAAGGAATACTTGCTTCGGGCAGAGTTCGGACTTCCCAGCGTAAAAGGCGAAGAGGAAGTGGTGGAGAGGAAAGCACCGGTGAGAG TGAAGTTCGAGATTCCATATTTCACCGTCTCGGGGATTCAGGTGCGTTATCTGAAGGTGATAGAGAAAGCAGGGTATCAGGCACTTCCATGGGTGAGATA TATAACAATGGCGGGAGAATATGAATTGAGAATGACTTACAACAATTGA
AA sequence Show only first row Show all	>Lus10018088 pacid=23147915 polypeptide=Lus10018088 locus=Lus10018088.g ID=Lus10018088.BGIv1.0 annot-version=v1.0 MIMGGAYFNGLSATTHLLVLTLTLNVSLLIIASSHRNEDGASPVAAVSPLITSLSQVEDDGRIINLDQGDPTMYEKFWKETAGDRATVVIPSWEFTSYFS DSGSICWFLEPQLARQIVRLHQGVGEAVTLFLAVLYALCPPNATNPASVVSMAPYYSSYPTTIDSLRSGLFRWAGDASKFKAHRPFVEFVTSPNNPDGFT RHPVVNRTGGFLVYDLAYYWPQYAPVTSPSDHDITLFTVSKSTGHAGIRIGWALVKDAEVARKMTKFIELSSLGVSKDSQLRATKIMEVVSDAEQESRQR ASADSSLFEFGLKNMKRRGEVKNMRLRWKMLRAAVKKSGGMFSLPDYRSEYCRFNGQSMSNQPAFAWMKCEGDVEDCEEVFKKNKILTRSGVNFGASRKY APPRRSSFLTSKAVSSFGETTAATSPPPRPSASSPRSSHRVVQVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRLEVAQ RPPVAVTNAVSWRSEGIKYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRLLMESQGRATKAKAIDLDDIKFHQCVRLAR FDNDRTISFIPPDGSFDLMTYRLATQVRPLIWVEAQVERHSRSRIELMVKARSQYKERSTATNVEIVLPVPSDATNPNVRTSMGSALYAPENDALVWKIS SFPGSKEYLLRAEFGLPSVKGEEEVVERKAPVRVKFEIPYFTVSGIQVRYLKVIEKAGYQALPWVRYITMAGEYELRMTYNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10018088 [exp]	0	1
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10010898 [exp]	7.7	0.8303
AT1G80530			Major facilitator superfamily ...		Lus10028803 [exp]	8.8	0.9095
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	11.3	0.9016
AT2G40550		ETG1	E2F target gene 1 (.1)		Lus10030540 [exp]	27.1	0.8672
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10039928 [exp]	27.8	0.8628
AT3G03960			TCP-1/cpn60 chaperonin family ...		Lus10002625 [exp]	33.0	0.8628
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	41.6	0.8648
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	44.5	0.8616
AT5G38970		ATBR6OX, CYP85A...	brassinosteroid-6-oxidase 1 (....		Lus10034377 [exp]	45.4	0.8619
AT1G06980			unknown protein		Lus10026407 [exp]	45.6	0.8592

Compare expression of checked genes

Lus10018088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.