Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14540 89 / 1e-18 Protein of unknown function (DUF1421) (.1) AT3G01560 81 / 3e-16 Protein of unknown function (DUF1421) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042086 [exp] 649 / 0 AT3G54170 381 / 3e-125 FKBP12 interacting protein 37 (.1) Lus10032138 [exp] 83 / 1e-16 AT5G14540 204 / 4e-58 Protein of unknown function (DUF1421) (.1) Lus10014549 [exp] 82 / 4e-16 AT5G14540 207 / 2e-59 Protein of unknown function (DUF1421) (.1) Lus10031645 [exp] 46 / 5e-05 AT4G28300 392 / 2e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T125008 [exp] 128 / 6e-32 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1) Potri.012G083200 [exp] 121 / 2e-29 AT5G14540 147 / 3e-38 Protein of unknown function (DUF1421) (.1) Potri.001G348500 [exp] 93 / 6e-20 AT5G14540 185 / 1e-51 Protein of unknown function (DUF1421) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF07223 [flax] [poplar] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Lus10018089 pacid=23147855 polypeptide=Lus10018089 locus=Lus10018089.g ID=Lus10018089.BGIv1.0 annot-version=v1.0 ATGAAGCCAGTCACGCGACTTCCTGATTCCCGCACACGCAATTTTTTCTCCGACGATGATGATGAAGACGATACTGGACTCTTCCACGGTGGACCTCCTC GCCGCGATTACTACGGAGATTACAGCTTCGAATTCCATCCAAATCCTACTTCGCAGGTGGTGATAACTTCTCTCTTTCCCCCAGCCATCTATTTCTATCT TATGCTTTTGCTGTTTGGCAAATCTTCCTGGCTATCTGTTGTTTGCTTGCTTACTTTGGTGATGCAACTTCTTCAGGTCTTCGATTCTGCTGACTTTAGT GATGGATTGAGTGCTGAGATCAACCGGATGATGAATGTGCACGCGGATGTTTTGCTTCGATCGGTAGATCGTCTCAGCTCGCACGTTTCTCGGATGGAAA GCAGAACACGGCGATTAGAAGATGCGTTTGATGATTTGAAAGAATCCGTCCGGTTTTACCAGGGGAAGACCGATGGACAGCTACAGCACCTCCAGAATGT TGTAACTGAGGTTCAGGACGGTGTCAAAGACTTGAGAGATAAGCAGGACATAGCAATGACACAGCTGCACCTTGCAGAGATTCACAAATCAGTGGACGAC TCTCAGTCAGGAAAGAAAGCTAGCACCATCCAAACTGGTTCAAGTGATCAAACACCTTCATCAGCCAGCCAGCAAGTCAATCAACCGCCTCCTAGCTTCA CAACCATATATCATCATGGCCCAACCGACCATATAGCAGCTTCAGCTCAGCCTCCTTTGCATCCACCAGCAAACTCCAATATAATTCCCCCAGCAGCACC CCAGTATACAGTCCAGTCACCCTACGATGCCTCTCTCCCGAAGCAACCATATTTCCAACCCCTGCCGAATTTCCAACCAGAAACTGCACATCAGCTAGTT CCTAATCCACAAACTGAGCAACTCCAGCCGTCATATTATCCTCAGCAGCCTCAGCAGACCCCTCTCACCATGGTTGATCCTCGAGTCAATTACCAGTCAA GCCAGCATTCCGGACTAGTTCCTTCAGCCTCATTATCTGGCAGGTTTTTCCATCATCAGCAACAGCCGAATATAGGCAGTGGCCAGCCAGCTCCCGCATA CTACAGTTATGGTGGCTCCTCATTACCTAGTAGTGGTAGACCAAATACAAAGTCACACGCATCTCTAGTGGCAACGACTGAGAGGGAAAGCTCACGGTCA CGGTCACGGTCACGACTCCCAACTGCTCAGTTGCTTCCACGTGCCATCCCGACCGCCTCTGCCGTGGAGGAAGCTTCGTCAGCAGCAGCATCTAGGGGAA ACATAAGCAGGGTGCCAGTGGACGATGTTGTTGACAAAGTCGTGGCTATGGGGTTCCGGAGAGACTTGGTCCGAGCAACGGTGAAAGTCCTGACGGAGAA TGGCCAGGCAGTGGATATGAATGTCGTGCTGGATAAGCTGATGAACAGTAAGTAA
AA sequence Show only first row Show all	>Lus10018089 pacid=23147855 polypeptide=Lus10018089 locus=Lus10018089.g ID=Lus10018089.BGIv1.0 annot-version=v1.0 MKPVTRLPDSRTRNFFSDDDDEDDTGLFHGGPPRRDYYGDYSFEFHPNPTSQVVITSLFPPAIYFYLMLLLFGKSSWLSVVCLLTLVMQLLQVFDSADFS DGLSAEINRMMNVHADVLLRSVDRLSSHVSRMESRTRRLEDAFDDLKESVRFYQGKTDGQLQHLQNVVTEVQDGVKDLRDKQDIAMTQLHLAEIHKSVDD SQSGKKASTIQTGSSDQTPSSASQQVNQPPPSFTTIYHHGPTDHIAASAQPPLHPPANSNIIPPAAPQYTVQSPYDASLPKQPYFQPLPNFQPETAHQLV PNPQTEQLQPSYYPQQPQQTPLTMVDPRVNYQSSQHSGLVPSASLSGRFFHHQQQPNIGSGQPAPAYYSYGGSSLPSSGRPNTKSHASLVATTERESSRS RSRSRLPTAQLLPRAIPTASAVEEASSAAASRGNISRVPVDDVVDKVVAMGFRRDLVRATVKVLTENGQAVDMNVVLDKLMNSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14540			Protein of unknown function (D...		Lus10018089 [exp]	0	1
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10024885 [exp]	8.2	0.7548
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Lus10016898 [exp]	10.1	0.8003
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Lus10036368 [exp]	12.1	0.7663
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Lus10009435 [exp]	18.4	0.7169
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	19.2	0.7571
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	21.5	0.7527
AT5G56660		ILL2	IAA-leucine resistant (ILR)-li...		Lus10029200 [exp]	25.2	0.6435
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	26.2	0.7409
AT1G22730			MA3 domain-containing protein ...		Lus10011324 [exp]	30.3	0.7473
AT4G29850			Eukaryotic protein of unknown ...		Lus10019737 [exp]	31.4	0.7409

Compare expression of checked genes

Lus10018089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.