Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54170 322 / 2e-109 ATFIP37 FKBP12 interacting protein 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042086 [exp] 546 / 0 AT3G54170 381 / 3e-125 FKBP12 interacting protein 37 (.1) Lus10039948 [exp] 399 / 7e-139 AT3G54170 414 / 4e-145 FKBP12 interacting protein 37 (.1) Lus10027681 [exp] 395 / 3e-137 AT3G54170 402 / 2e-140 FKBP12 interacting protein 37 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197600 [exp] 408 / 6e-143 AT3G54170 359 / 5e-124 FKBP12 interacting protein 37 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018090 pacid=23148006 polypeptide=Lus10018090 locus=Lus10018090.g ID=Lus10018090.BGIv1.0 annot-version=v1.0 ATGGCTTCTCGCAACCATCTGGACGACGATGATGGCTTCGGCGGCGATTTCAATGGAAGTCACAACGACAACCGTTCAGGTAATAAGAGAAGCTTTGGGG ATATTGAGGACGATGAAGATGATATATTCAGCTCCAAGAAGGGGAGTTCTAAGGTTGAAGAAACAGCAATGATTCTGTCTCTTCGAGAGAGCCTTGATAA TTGCAAAAATGACCTTACTTCATGCCAAACAAAGCTTGAAGCAATGAAGTCGGAGATTGGGAAGTGGCATTCTACATTTGATAATATCCCCGGCATACCC TCTGGAGCATCTCCTGAACCTAAACTAGTCATCTGTTATCTTCAAACTCTGAAATCTTCCGAGGAGTCATTGAAGGAACAGCTCGAGAAAGCAAAGAAAA AGGAAGCAGCCTTCATTGTAACATTTGCCAAGCGAGAACAGGAGATTGCAGAATTAAAGTCTGCTGTCCGGGACCTAAGAGCTCAGCTAAAGCCACCATC AATGCAGGCAAGGAGATTGCTACTTGATCCAGCAATTCATGAGGAATTTACTCGCTTGAAGACTTTGATTGAAGAGAAGGACAAAAAGGTGAAGGAACTA CAGGATAACATTGCTGCAATGAGTTTTACTCCTCAAAGCAAGATGGGAAAGATGCTGATGGCAAAGTGTAGGACTCTTCAAGACGAAAATGATGAGATTG GCTCTGCAGCTGCTGAAGGACCTATCCATGAGTTGGCACTGAAGCTTGCTTTGCAGAAATCTCAGAATGTAGAGCTCCGAAATCATTACGGGGATCTGTA TGATCATATGGAGGGCGTATTGGACGATGTAGAGAAATCAAATGAAATGGTCCTTTTATTGCAAGAGAAACTTGGGGAAAAGGATGAGGAGATTTACCAG CTGAAGAAGATGATTGAGCTGCAAGAGAAGAACTCAGTAGAGGCAGAAGCAGATGATCAACCCAATAATCTGATTGTAGAGAACACTGGAGCAGTTAGCA ATGAAGTGGTGACTCCAAAGCAAGAGATTGAGGCTACTGAGTAA
AA sequence Show only first row Show all	>Lus10018090 pacid=23148006 polypeptide=Lus10018090 locus=Lus10018090.g ID=Lus10018090.BGIv1.0 annot-version=v1.0 MASRNHLDDDDGFGGDFNGSHNDNRSGNKRSFGDIEDDEDDIFSSKKGSSKVEETAMILSLRESLDNCKNDLTSCQTKLEAMKSEIGKWHSTFDNIPGIP SGASPEPKLVICYLQTLKSSEESLKEQLEKAKKKEAAFIVTFAKREQEIAELKSAVRDLRAQLKPPSMQARRLLLDPAIHEEFTRLKTLIEEKDKKVKEL QDNIAAMSFTPQSKMGKMLMAKCRTLQDENDEIGSAAAEGPIHELALKLALQKSQNVELRNHYGDLYDHMEGVLDDVEKSNEMVLLLQEKLGEKDEEIYQ LKKMIELQEKNSVEAEADDQPNNLIVENTGAVSNEVVTPKQEIEATE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10018090 [exp]	0	1
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	3.5	0.9494
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10022337 [exp]	4.5	0.9147
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	6.0	0.9321
AT2G01220			Nucleotidylyl transferase supe...		Lus10032989 [exp]	6.5	0.9361
AT5G19840			2-oxoglutarate (2OG) and Fe(II...		Lus10000493 [exp]	6.7	0.9164
AT4G26310			elongation factor P (EF-P) fam...		Lus10007884 [exp]	7.5	0.9134
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10041586 [exp]	9.2	0.9102
AT1G55340			Protein of unknown function (D...		Lus10013412 [exp]	9.2	0.9263
AT1G11890		ATSEC22, SEC22	SECRETION 22, Synaptobrevin fa...		Lus10036987 [exp]	9.8	0.9107
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	11.0	0.9384

Compare expression of checked genes

Lus10018090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.