Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23490 213 / 2e-71 CYN cyanase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042087 [exp] 276 / 5e-96 AT3G23490 241 / 2e-82 cyanase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G068200 [exp] 219 / 4e-74 AT3G23490 217 / 2e-73 cyanase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02560 [flax] [poplar] Cyanate_lyase Cyanate lyase C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018091 pacid=23147889 polypeptide=Lus10018091 locus=Lus10018091.g ID=Lus10018091.BGIv1.0 annot-version=v1.0 ATGGAAGAAACGAAAGCGGCGATCTGCGGCCGGCTGCAGTCAGTGAGATGCAACTCCGGCAAGAGCTACACTGAGCTCGCGGAAGAGACAGGGCTCACCA ATGTGTATGTCGCTCAGCTGCTGCGTCGACAGGCTCAACTGAAGGCCGATACTGCTCCGAAGCTTAAAGCTGCGTTGCCTGAGCTGTCCGATGAGCTCAT TAACGAGATGATGAAGCCTCCATTTAGGTCCTACAACCCCAGTATGATTCAGGAACCCACTATTTACAGGTTAAATGAAGCTGTTATGCACTTTGGTGAA AGCATAAAGGAGATCATCAATGAGGAATTCGGCGATGGCATCATGTCAGCCATAGATTTCTACTGCTCAGTGGACAAAGTGAAAGGTGTTGATGGAAAAG ATCGTGTTGTGCTGACATTTGATGGCAAATATTTGCCTCATACCGAGCAGGTTTGGTTTTGTTCTCGTCGCTCGTTTACTTCTCCGCTCAATTTCTACTT CAAGCCAATCTGA
AA sequence Show only first row Show all	>Lus10018091 pacid=23147889 polypeptide=Lus10018091 locus=Lus10018091.g ID=Lus10018091.BGIv1.0 annot-version=v1.0 MEETKAAICGRLQSVRCNSGKSYTELAEETGLTNVYVAQLLRRQAQLKADTAPKLKAALPELSDELINEMMKPPFRSYNPSMIQEPTIYRLNEAVMHFGE SIKEIINEEFGDGIMSAIDFYCSVDKVKGVDGKDRVVLTFDGKYLPHTEQVWFCSRRSFTSPLNFYFKPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23490		CYN	cyanase (.1)		Lus10018091 [exp]	0	1
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10000044 [exp]	3.2	0.8128
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10023188 [exp]	3.7	0.8358
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	4.0	0.8292
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Lus10013769 [exp]	4.5	0.8223
AT4G08230			glycine-rich protein (.1.2)		Lus10024100 [exp]	8.8	0.8281
					Lus10009043 [exp]	11.2	0.7800
AT1G11360			Adenine nucleotide alpha hydro...		Lus10018515 [exp]	12.0	0.8009
AT2G35900			unknown protein		Lus10021249 [exp]	14.5	0.8092
					Lus10038116 [exp]	17.0	0.7774
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10025945 [exp]	17.6	0.7722

Compare expression of checked genes

Lus10018091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.