Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48210 238 / 2e-77 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042089 [exp] 527 / 0 AT3G48210 219 / 4e-70 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124408 [exp] 320 / 6e-110 AT3G48210 236 / 1e-76 unknown protein Potri.015G080900 [exp] 313 / 3e-107 AT3G48210 255 / 7e-84 unknown protein Potri.012G088000 [exp] 313 / 5e-107 AT3G48210 222 / 6e-71 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08234 [flax] [poplar] Spindle_Spc25 Chromosome segregation protein Spc25
Representative CDS sequence Show only first row Show all	>Lus10018093 pacid=23147983 polypeptide=Lus10018093 locus=Lus10018093.g ID=Lus10018093.BGIv1.0 annot-version=v1.0 ATGGAGACGCTGCGCTTGATCTCTGAAGAGAAGATTCCTCGTGAGCTTGAGAGAATGGACTCCTTCGCGGAGCATTGCGCCACTTCGTTGGATTCGGTCA AGGTCAAAGCTGGAGACACGGCTCAGTGTCACGGGAAAATATGGAAGCTCAAGTCTACCTTGAGAGAAGCTGAAGATGAATTTGTGAAAGTCTTGTCAGT GAAGACGAGGAAAGAGGCCAGACAGATGGCTCTTAAAGACTCCATCAATGCTGTACGAAATCGGTCAGAAGAACTTAGAAGGAATTTGCAAATTCAAACA TCAAGAAGGGATGAGTACGCTGGAATTATCTCTCAATTATCCCGTGGGAACCAGGACGATGAATGCAGAGGGGATACTCAAGAGGCATTGTCATGGTACA ATAGAGTTCTGGGGTTCCAAATTGAAGGAGGCCATGGGGTTAAATTCACATTCGAAAACATCAGCGTAAAAAATCCATCCGAAAAGTACTCCTTCAGTAT TCGACATGAGAATGATACATACAGCTTATTGGCTTGCGATCCACAGCTGAATGATACCAAGGAGCTGATCAATGAGCTGAATAGAACCAATGGCTTATTC AAGTTTGTCAGAACAATGAGGGAAAAGTTTCAAGAAGTTGCAGCGTCTGGATCTATGCATCAATCCACAAGTCTGCAACAAGAGTTGTCCACAATATCTG CATCTGCTCCAGCTATGTCAGCTTCGACTTACCAAAGTGAATCTCCAGCACCGAATAAGAATCATTCAGATAATGCCGGAAGATGCTCGGGCAGGAAAGG ACTATTGTCCCCTGACTCTATACGCCGATCTCCTCGTTTTCGGGTAACTTTACCAACAATCTAA
AA sequence Show only first row Show all	>Lus10018093 pacid=23147983 polypeptide=Lus10018093 locus=Lus10018093.g ID=Lus10018093.BGIv1.0 annot-version=v1.0 METLRLISEEKIPRELERMDSFAEHCATSLDSVKVKAGDTAQCHGKIWKLKSTLREAEDEFVKVLSVKTRKEARQMALKDSINAVRNRSEELRRNLQIQT SRRDEYAGIISQLSRGNQDDECRGDTQEALSWYNRVLGFQIEGGHGVKFTFENISVKNPSEKYSFSIRHENDTYSLLACDPQLNDTKELINELNRTNGLF KFVRTMREKFQEVAASGSMHQSTSLQQELSTISASAPAMSASTYQSESPAPNKNHSDNAGRCSGRKGLLSPDSIRRSPRFRVTLPTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48210			unknown protein		Lus10018093 [exp]	0	1
AT1G77580			Plant protein of unknown funct...		Lus10042719 [exp]	1.0	0.9022
AT3G48210			unknown protein		Lus10042089 [exp]	1.4	0.8830
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	1.7	0.8768
AT5G58160			actin binding (.1)		Lus10007447 [exp]	6.5	0.8376
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	7.1	0.8250
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	7.7	0.8537
AT3G11920			glutaredoxin-related (.1)		Lus10034196 [exp]	8.2	0.7899
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	8.9	0.8474
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	9.5	0.8287
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10036865 [exp]	10.6	0.8174

Compare expression of checked genes

Lus10018093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.