Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56040 240 / 2e-72 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G26540 226 / 2e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 206 / 4e-60 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G34110 203 / 2e-59 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 196 / 7e-57 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G08590 176 / 8e-50 Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 175 / 2e-49 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G17230 173 / 6e-49 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 173 / 1e-48 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G28650 172 / 1e-48 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042090 [exp] 424 / 1e-149 AT5G56040 378 / 2e-121 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10032954 [exp] 236 / 6e-71 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10023677 [exp] 219 / 8e-65 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10011756 [exp] 214 / 6e-63 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10018911 [exp] 211 / 4e-62 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 207 / 9e-61 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10000509 [exp] 206 / 4e-60 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 206 / 4e-60 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 175 / 2e-49 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G080800 [exp] 361 / 4e-117 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.012G088100 [exp] 350 / 5e-113 AT5G56040 1005 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.011G164800 [exp] 240 / 2e-72 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G467300 [exp] 238 / 8e-72 AT4G26540 1347 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 221 / 2e-65 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 219 / 6e-65 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 211 / 6e-62 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G070900 [exp] 209 / 3e-61 AT3G24240 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.005G188700 [exp] 207 / 8e-61 AT5G48940 1011 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G063300 [exp] 206 / 1e-60 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10018094 pacid=23147914 polypeptide=Lus10018094 locus=Lus10018094.g ID=Lus10018094.BGIv1.0 annot-version=v1.0 ATGGTCAACGGAACCTTAGGAGCGTTACTCCATGAAGGCGGCGCCTTGTTGGAATGGGAAACAAGATTCAAAATCGCCCTAGGTGTAGCTGAAGGATTAT CGTACCTCCACCACGATTGCGTCCCTGCGATCCTCCACCGTGATGTTAAATCGCACATCCTCCTTGGGGATCGATACGAGTCTTGTCTGGCCGATTTTGG CCTGGCTAGACTGGTGGGGGGCGGGCGGGGGTCGTTGTGTCTGGCCGATTTTGGCCTGGCTAGACTGGTGGAGGACGGTCGGGGATCGTTCTCTGAGAAT CCTCAATTGGCGGGATCATACGGTTACATGGCACCAGAGTATGCTTGTATGCTAAAAATAACAGAGAAGAGCGATGTGTACAGCTACGGAGTAGTGTTAT TAGAGATCATAACTGGGAAAAAGCCTGTGGATCCATCGTTTCCGGAAGAGCAACACGTGATTCAATGGGTGAGAGAGCATCTAAAGAGCAAGAAGGACCC GGCCGAGATACTCGACCCGAAGTTGCAAGGCCATCCAAACACACAAATACAGGAAATGCTTCAAGCATTGGGGATATCCTTGCTATGCACGAGCAACCGG GGCGAAGATAGGCCAACAATGAAGGATGTGGCGGCTTTGCTTAGGGAGATTCGACACGAGCCGGTTGTCGGTAACGACGCTCAGAAGCCGGGGAAGGAGG GAGATAGTTTGACGACGAAAATGTCGTCTTCTGGCATCACTCCGGCACAGATGATGATGCTGCAAGCCTCGTCGAACTGCTCGCTGGCGAATTACTCGTC TAGTTATGGTAACAGTAGGAGTTGA
AA sequence Show only first row Show all	>Lus10018094 pacid=23147914 polypeptide=Lus10018094 locus=Lus10018094.g ID=Lus10018094.BGIv1.0 annot-version=v1.0 MVNGTLGALLHEGGALLEWETRFKIALGVAEGLSYLHHDCVPAILHRDVKSHILLGDRYESCLADFGLARLVGGGRGSLCLADFGLARLVEDGRGSFSEN PQLAGSYGYMAPEYACMLKITEKSDVYSYGVVLLEIITGKKPVDPSFPEEQHVIQWVREHLKSKKDPAEILDPKLQGHPNTQIQEMLQALGISLLCTSNR GEDRPTMKDVAALLREIRHEPVVGNDAQKPGKEGDSLTTKMSSSGITPAQMMMLQASSNCSLANYSSSYGNSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56040			Leucine-rich receptor-like pro...		Lus10018094 [exp]	0	1
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	2.4	0.9538
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	3.5	0.9541
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	3.5	0.9666
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10034032 [exp]	4.5	0.9526
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	6.6	0.9528
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	7.7	0.9502
AT5G62620			Galactosyltransferase family p...		Lus10004256 [exp]	11.0	0.9391
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	13.1	0.9435
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010511 [exp]	13.9	0.9147
AT4G33590			unknown protein		Lus10041131 [exp]	15.5	0.9452

Compare expression of checked genes

Lus10018094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.