Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23880 45 / 7e-05 F-box and associated interaction domains-containing protein (.1) AT4G38870 44 / 0.0002 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001105 [exp] 107 / 6e-25 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10018008 [exp] 102 / 4e-23 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10009424 [exp] 96 / 4e-21 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10029725 [exp] 96 / 5e-21 AT3G06240 74 / 3e-14 F-box family protein (.1) Lus10027824 [exp] 88 / 1e-18 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10014935 [exp] 83 / 7e-17 AT3G06240 84 / 2e-17 F-box family protein (.1) Lus10018969 [exp] 79 / 8e-17 AT1G32420 47 / 4e-06 F-box and associated interaction domains-containing protein (.1) Lus10023372 [exp] 80 / 9e-16 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10028961 [exp] 77 / 5e-15 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G199800 [exp] 62 / 3e-10 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 57 / 2e-08 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.006G011400 [exp] 53 / 3e-07 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G012200 [exp] 52 / 4e-07 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 49 / 7e-06 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.002G223000 [exp] 47 / 2e-05 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.015G011000 [exp] 45 / 6e-05 AT3G17490 77 / 8e-16 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018095 pacid=23147881 polypeptide=Lus10018095 locus=Lus10018095.g ID=Lus10018095.BGIv1.0 annot-version=v1.0 ATGAAGAGGGAGGATTCTGATTCCGCAGCAAGTGGTCGTAGGTTTGTGCCGGAAGAGTTAGTGACGAATATAATAAAGAGGATAGATGATCCCAGTTGTG TCGTCAGATTCCGCACCCTCAACAAATCATGGTCCCGTCTTCTCTCCACCACCAACTTCCTCCACAGCTTCCTTCTTTTCAACCAAGACGACCACCACAA CGAGGATGTCCCTTGTCCACAGATAATTGTGATGCGGGATCTCGAATTTTACACCCAGTTCGAAATCCGACGTCACAGGGTATTCTCTTGCCTCTCTTAC GATGCCCTACAAGAAACTACTCCCGCAACTACTGCTTTTGATCCTATTTCTTTTCCTCCTCCTATTGATCGTTATCGTCCTGGTGAGCCATTGCTTCCTA CGCCTCGCGATGTAACAATCGTTGGGAGTTGTCACGGCATTTTGTGTCTGTCTATTCGACACTACAGTTTCCGCACCCCATCCGATTTGATTCTGTGGAA CCCCACAACTTCCGAGACCAAGCTATTGCCACCATTCCCCATTATTCCCTTTGTCCGCCGTCGTCTTCGTCGTCATCCTGGTCGTTCTTTGATCACATTC TGGGAACACCTTGGGTTCGGCTTCCATTCCACGTCGGCAGACTACAAGATTGTTGCCACTGTTTCCTGGAGGTCGTTAGACCTGAGGGGAGATAGACTGT ATCTCAACAGAAGAGGCCTTTGTTGTTGGATTTATAGCATGAGGGATCACAAGTGGACCAAGTTTGCAACTACAAGTACTAATACCCCTTCTCCATTTTC GTACGGGAATTACAATCAAGCCGGCGGCACGAATAATGATGACATATGCTACTGGTGGAGCGCTGCGAACGCCCAGGTCGATACGTACAAAATAATGTCG TTTGACATGAACAAGCAGTCCTTCAAATTCGTAAAGGTAAGCTCACCTAACAAGCTTATAGGTCCACCTATCCGCGCTGAATCCGTAAGCAAGCTTTTCG TCCGCAAAAACTCTCTCATGCTTATCTATGAGATCATTGGTGGCCCTGCTACTGCTCCTCCTCCTGCTCCCGATGCTGCTGCTGGTATAGAAGAGAAGGC AAATCAGTGCTATGAGATATGGACGTTGTTAAACTACAACAACAGCGAGCTCAACACATTAGACTCTAGTTCCGGAAACTGGATTAGATTGTATGTTCTT GATCCGTCTTTAATCATCACTCCGATTCTTGCTCACCAAGTTCATCACAAAGAGCGCATTCCTGGGATTTGGAAAGATGGGTATTACTTCTCCGTGACTA ATCAGGGAAAACTTACTGTCTTTAATCCGGAGAGTGGTCAACTTAGAGATCTCGATATCCATGGAGGTAGATCAAGTTTTCAACTCGAAGTCTTCACTCC GTCGACAGTTGCGTTTTCCGAGCTTACAAAGACTAACAACCTCCGCGACACGCCTTGTTGCTTCTATTTCTTTAAGCGCAATTAG
AA sequence Show only first row Show all	>Lus10018095 pacid=23147881 polypeptide=Lus10018095 locus=Lus10018095.g ID=Lus10018095.BGIv1.0 annot-version=v1.0 MKREDSDSAASGRRFVPEELVTNIIKRIDDPSCVVRFRTLNKSWSRLLSTTNFLHSFLLFNQDDHHNEDVPCPQIIVMRDLEFYTQFEIRRHRVFSCLSY DALQETTPATTAFDPISFPPPIDRYRPGEPLLPTPRDVTIVGSCHGILCLSIRHYSFRTPSDLILWNPTTSETKLLPPFPIIPFVRRRLRRHPGRSLITF WEHLGFGFHSTSADYKIVATVSWRSLDLRGDRLYLNRRGLCCWIYSMRDHKWTKFATTSTNTPSPFSYGNYNQAGGTNNDDICYWWSAANAQVDTYKIMS FDMNKQSFKFVKVSSPNKLIGPPIRAESVSKLFVRKNSLMLIYEIIGGPATAPPPAPDAAAGIEEKANQCYEIWTLLNYNNSELNTLDSSSGNWIRLYVL DPSLIITPILAHQVHHKERIPGIWKDGYYFSVTNQGKLTVFNPESGQLRDLDIHGGRSSFQLEVFTPSTVAFSELTKTNNLRDTPCCFYFFKRN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018095 [exp]	0	1
AT4G15760		MO1	monooxygenase 1 (.1.2)		Lus10028081 [exp]	1.4	0.9596
AT4G32480			Protein of unknown function (D...		Lus10039838 [exp]	5.5	0.9087
AT2G42005			Transmembrane amino acid trans...		Lus10026549 [exp]	9.8	0.9374
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10038781 [exp]	10.8	0.9318
AT1G05675			UDP-Glycosyltransferase superf...		Lus10010468 [exp]	11.0	0.9281
AT5G02090			unknown protein		Lus10010878 [exp]	11.7	0.9335
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10026386 [exp]	15.7	0.9224
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030457 [exp]	16.9	0.9317
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025775 [exp]	22.4	0.9250
					Lus10027034 [exp]	25.7	0.8678

Compare expression of checked genes

Lus10018095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.