Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19300 119 / 4e-31 Protein kinase superfamily protein (.1) AT5G66790 116 / 2e-30 Protein kinase superfamily protein (.1) AT1G07870 114 / 4e-30 Protein kinase superfamily protein (.1.2) AT2G33580 114 / 2e-29 Protein kinase superfamily protein (.1) AT3G51990 111 / 2e-29 Protein kinase superfamily protein (.1) AT5G02290 111 / 3e-29 NAK Protein kinase superfamily protein (.1.2) AT5G42440 111 / 3e-29 Protein kinase superfamily protein (.1) AT2G28590 110 / 9e-29 Protein kinase superfamily protein (.1) AT5G02070 111 / 2e-28 Protein kinase family protein (.1) AT1G49730 111 / 2e-28 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016021 [exp] 114 / 3e-30 AT1G20650 516 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10012249 [exp] 114 / 2e-29 AT1G20720 1074 / 0.0 RAD3-like DNA-binding helicase protein (.1) Lus10030741 [exp] 112 / 2e-29 AT1G20650 523 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Lus10021489 [exp] 112 / 2e-29 AT2G02800 459 / 3e-161 protein kinase 2B (.1.2) Lus10041426 [exp] 112 / 2e-29 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022591 [exp] 112 / 3e-29 AT2G02800 462 / 2e-162 protein kinase 2B (.1.2) Lus10003533 [exp] 112 / 4e-29 AT5G16500 468 / 1e-159 Protein kinase superfamily protein (.1) Lus10016952 [exp] 112 / 8e-29 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10013384 [exp] 112 / 1e-28 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G020700 [exp] 116 / 5e-31 AT1G14370 446 / 7e-156 PBS1-like 2, kinase 1, protein kinase 2A (.1) Potri.002G009300 [exp] 113 / 6e-30 AT1G20650 548 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) Potri.001G234100 [exp] 112 / 3e-29 AT1G07870 590 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G140301 [exp] 113 / 4e-29 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.006G118500 [exp] 113 / 4e-29 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.009G100400 [exp] 113 / 5e-29 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.016G094300 [exp] 111 / 5e-29 AT1G07570 540 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G026500 [exp] 110 / 9e-29 AT1G07870 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G242700 [exp] 111 / 2e-28 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G120800 [exp] 111 / 2e-28 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10018096 pacid=23147935 polypeptide=Lus10018096 locus=Lus10018096.g ID=Lus10018096.BGIv1.0 annot-version=v1.0 ATGTTAAATGAAATCCAAGCCCTACGCCGCACTGACAATGCCGCCATCATAAGACTTTTTGGTTTTTCCCAAAGACCACCGTCTCTTGTTTACGAGCACA TGCCCAGAGGGTCATTGTATGAACACTTGCATGTATTAAACGCTGAGGCACAGCCACTTAGTTGGCAAAGAAGATTACTCATAGCCCGCGATGTTGCCGA GGCATTGCGGCATCTTCGAGGTTTGGATCCCATGATTTTACATGGAGACTTAAAATCTGCCAACGTCTTGCTCGACGGCAACTTTAATGCCAAGTTGGCA GATTTTGGCTTGGCTAGGAAAATTCGAGAAGGGGATCCTCCAATTCCTAAAGACCCAAAAGGTTTTGGCACTCAGGGCTACTATCCTCAAACAGATGACT CCATCACAATTCATTTTGATATTTATAGTTTTGGAGTTATGCTGGTGGAGCTTATAACGGGAAGAACGGCATTCGATGCCTCCAGAGCTGAGATAGGCCG TGACCTTGGCATATGGGTAACAATGTGTTTATTAATTATATCTTTGATTTGCAAAATTTACTCTTTTGTGTTATATACATGA
AA sequence Show only first row Show all	>Lus10018096 pacid=23147935 polypeptide=Lus10018096 locus=Lus10018096.g ID=Lus10018096.BGIv1.0 annot-version=v1.0 MLNEIQALRRTDNAAIIRLFGFSQRPPSLVYEHMPRGSLYEHLHVLNAEAQPLSWQRRLLIARDVAEALRHLRGLDPMILHGDLKSANVLLDGNFNAKLA DFGLARKIREGDPPIPKDPKGFGTQGYYPQTDDSITIHFDIYSFGVMLVELITGRTAFDASRAEIGRDLGIWVTMCLLIISLICKIYSFVLYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19300			Protein kinase superfamily pro...		Lus10018096 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	3.7	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	5.3	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	6.5	1.0000
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	7.3	1.0000
					Lus10011636 [exp]	7.5	1.0000
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	8.4	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	9.2	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	9.9	1.0000
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	10.6	1.0000
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	11.2	1.0000

Compare expression of checked genes

Lus10018096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.