Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24230 356 / 4e-122 Lipase class 3-related protein (.1) AT4G10955 346 / 3e-118 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G05260 338 / 5e-115 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G24220 292 / 6e-97 Lipase class 3-related protein (.1) AT5G24180 281 / 2e-92 Lipase class 3-related protein (.1) AT5G24200 230 / 4e-73 alpha/beta-Hydrolases superfamily protein (.1) AT5G24210 207 / 4e-64 alpha/beta-Hydrolases superfamily protein (.1) AT5G24190 165 / 3e-49 Lipase class 3-related protein (.1) AT5G50890 146 / 3e-40 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022416 [exp] 511 / 0 AT5G24230 268 / 7e-89 Lipase class 3-related protein (.1) Lus10003188 [exp] 374 / 4e-129 AT4G10955 456 / 7e-162 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001819 [exp] 372 / 1e-128 AT4G10955 444 / 4e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10023072 [exp] 370 / 1e-127 AT4G10955 441 / 2e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031455 [exp] 160 / 1e-45 AT5G50890 478 / 4e-169 alpha/beta-Hydrolases superfamily protein (.1) Lus10001506 [exp] 154 / 3e-43 AT5G50890 469 / 1e-165 alpha/beta-Hydrolases superfamily protein (.1) Lus10020755 [exp] 142 / 1e-38 AT5G50890 494 / 5e-175 alpha/beta-Hydrolases superfamily protein (.1) Lus10007331 [exp] 141 / 2e-38 AT5G50890 487 / 6e-172 alpha/beta-Hydrolases superfamily protein (.1) Lus10032396 [exp] 0 / 1 AT4G10955 206 / 3e-102 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G141100 [exp] 389 / 2e-135 AT4G10955 464 / 7e-165 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G090500 [exp] 384 / 3e-133 AT4G10955 472 / 9e-168 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G204100 [exp] 161 / 5e-46 AT5G50890 537 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G058100 [exp] 157 / 2e-44 AT5G50890 550 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10018097 pacid=23145176 polypeptide=Lus10018097 locus=Lus10018097.g ID=Lus10018097.BGIv1.0 annot-version=v1.0 ATGGGAGGAAAGGAAGAAGGAAAAGAGGAATCAGTCCTATCTAAGAGGGAAATCTTCGACATCTCAGGACCATTGCATCTCACGGAGATTGACTGGAGCA ATACTGATCACAGACGATCAATCGCAGCATCTTTAGTTCAAGGAGTGTCTGTGAAAGAGAGGGATCGCCAGAAGAAGCGGCAAGGTCCAGAAGCTCAGGC GATCCATTGGTGGACTTTCTTCAATTTCCAACTGGTCAATCTTCTTTTAGACAACAATGATAAGTCTATCTTTGGTGCCATCTTTGAATACAAGTCCATT AAACCAAAAACAAACCCTGAGACTCCTCCTGGCAAAACCGCCCCAAGTTACGTGATTGCTTTCCGCGGCACGTTGAACAAGCCAGACTCTATATCCAGGG ACATTGAGCTGGACCTTCTCTGCATCCGCCACAAACTTCACAAGAGTTCTCGTTTCCGAGTCGCAATGGAGGCAGTCCACGACGTGATTAGCGTAGCCGG CTCCGATAACCTCTGGATAGCTGGCCATTCTTTGGGGTCAGCCATTGCATTGCTTGCAGGAAAGAAGATGGCCAAAGGGGGGACTCTCATAGAAACTTAC CTTTTCAACCCGCCATTCTTGTCCGCTCCGATCGAGAGAATAAAGAATAAGAAACTGAAGCAAGGAATGCGCTTTACGAGTGGTGTTGTCAAGGCCGGAC TGGTGGCGACAGAGAGCCAAGACCGGAAGACACGAAAAGAATCAGAGTTCGCGGTGTTGTCCACTTGGATGCCTTACATGTTCTTGAATCCTAACGACCA TATATGTGCTGGGTACATAGGCTACTTTGAACACAGGAGGAGAATGGAAGAGAGAGGTGCTGGAAAGATTGAACAAATCGCCGTGACGACCTCTGTTGCT GGGCTGCTTTCGGGAAGTTATTCGGAGCCGTTGCATCTTGTTCCTTCAGCACATTTGACTGTAAATTCGAGTCAGATTACTACTTTCAAAAAAGCACATG GAATACACCAGTGGTGGAATCCTGAACATTGTTTTTGTTCTGCTGCATTCCGATTTACGTAG
AA sequence Show only first row Show all	>Lus10018097 pacid=23145176 polypeptide=Lus10018097 locus=Lus10018097.g ID=Lus10018097.BGIv1.0 annot-version=v1.0 MGGKEEGKEESVLSKREIFDISGPLHLTEIDWSNTDHRRSIAASLVQGVSVKERDRQKKRQGPEAQAIHWWTFFNFQLVNLLLDNNDKSIFGAIFEYKSI KPKTNPETPPGKTAPSYVIAFRGTLNKPDSISRDIELDLLCIRHKLHKSSRFRVAMEAVHDVISVAGSDNLWIAGHSLGSAIALLAGKKMAKGGTLIETY LFNPPFLSAPIERIKNKKLKQGMRFTSGVVKAGLVATESQDRKTRKESEFAVLSTWMPYMFLNPNDHICAGYIGYFEHRRRMEERGAGKIEQIAVTTSVA GLLSGSYSEPLHLVPSAHLTVNSSQITTFKKAHGIHQWWNPEHCFCSAAFRFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24230			Lipase class 3-related protein...		Lus10018097 [exp]	0	1
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10020001 [exp]	1.0	0.9745
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10041935 [exp]	1.4	0.9073
					Lus10017801 [exp]	6.6	0.8225
					Lus10026426 [exp]	8.1	0.8747
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025414 [exp]	11.5	0.8108
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10020822 [exp]	16.5	0.7240
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	20.8	0.7533
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	23.1	0.8222
AT2G23200			Protein kinase superfamily pro...		Lus10012646 [exp]	27.4	0.7563
AT2G32750			Exostosin family protein (.1)		Lus10007426 [exp]	32.0	0.7108

Compare expression of checked genes

Lus10018097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.