Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20950 626 / 0 Glycosyl hydrolase family protein (.1.2) AT5G20940 620 / 0 Glycosyl hydrolase family protein (.1) AT5G04885 595 / 0 Glycosyl hydrolase family protein (.1) AT3G47000 498 / 1e-171 Glycosyl hydrolase family protein (.1) AT3G47010 489 / 4e-168 Glycosyl hydrolase family protein (.1.2) AT3G62710 488 / 4e-167 Glycosyl hydrolase family protein (.1) AT3G47050 486 / 1e-166 Glycosyl hydrolase family protein (.1.2) AT3G47040 483 / 4e-165 Glycosyl hydrolase family protein (.1.2) AT5G64570 117 / 1e-27 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT1G02640 117 / 2e-27 ATBXL2, BXL2 beta-xylosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022413 [exp] 874 / 0 AT5G20950 837 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10023604 [exp] 737 / 0 AT5G20950 822 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10001151 [exp] 658 / 0 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 631 / 0 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 626 / 0 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 625 / 0 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010656 [exp] 613 / 0 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013646 [exp] 612 / 0 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 595 / 0 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G055600 [exp] 657 / 0 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 656 / 0 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G153900 [exp] 646 / 0 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 620 / 0 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013700 [exp] 611 / 0 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G042800 [exp] 505 / 2e-174 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G059200 [exp] 272 / 4e-88 AT5G04885 385 / 8e-131 Glycosyl hydrolase family protein (.1) Potri.009G154701 [exp] 251 / 5e-81 AT5G04885 286 / 6e-94 Glycosyl hydrolase family protein (.1) Potri.009G154032 [exp] 228 / 4e-72 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 148 / 4e-41 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018102 pacid=23145260 polypeptide=Lus10018102 locus=Lus10018102.g ID=Lus10018102.BGIv1.0 annot-version=v1.0 ATGTTGAGTCTTGCTGGAAGCATGGTAAACGTGTTTACGACTGTCCCTGACATTTTACCGACAAAACCACAACCAGCTCACAACAACATCACGGTGGGAA GGTGGGTTTACAGCATCAATAAGATCCAAAATGCTGCCCTTTCCACTCCCCTCGCCATCCCCATGTTGTACGGGATTGATGCTGTCCATGGCCACAACTA TGCCTACAAAGCCCCCATCTTCCCTCACAACATCGGCCTTGGTGTCACTAGGGACTCGGACCTTGTCAAAAGGATTGGAGCTGCCACTGCCGCTGAAATT AGGGCCACCGGGGTCCATTACGCCTTCTCCCCCACCATCGTTGTTTGTAGAGACCCGAGGTGGGGTCGGTGCTTCGAAAGCTACAGCGAGGACCCAAGCA TCGTGACGCAAATGACAGAGATCATCCCGGGGTTGCAAGGCGAAATTCCACCAAACTCCAACCACGGTGTTCCCTTCGTTAATGCTCGTGACAAGACAAA AATGGCAGCCTGCGCCAAACATTACGTGGGAGACGGTGGAACAGTGAAGGGTATTGACAGGAACAACACAGTGATCCCTTGGGATGGACTGATGAAGACC CATATGCTGCCATATCTGGATGCTATCTACAAAGGAGTGTCCACCGTAATGGTATCCTACTCCAGTTGGAACGGTAAGAAGATGCATGCCAACCGTAAAC TCATCACTTCCTTCCTCAAGAATAAACTCAAATTCAGGGGCTTTGTGGTCTCGGATTGGCTGGGGGTTGAGAGGATTACTACTCCTGAACATGCAAACTA TTCCAACTCCATTCAGGCTGCATTGAAAGCAGGGATTGACATGGGAATTCATCAAGGACCTCACATACAAAGTAGAGAATCACATAATCCCATGTCGACG ATAGATGATGCTGTGTCCAGAATTCTTAGAGTCAAGTTCACCATGGGGTTGTTCGAGACACCCCTCGCTGATCATACCATGGCCAGTGAGCTAGGCAAGA AGGAGCACAGAGAGTTGGCAAGAGAGGCTGTGAGGAAGTCTCTTGTTCTGTTGAAGAATGGAAAATCCGGCGAGGAGCCCCTGCTTCCACTTCAGAAGAA GGGTGCTCCCAAGATTCTGGTGGCTGGGTCTCATGCACACAACTTGGGTTTACAATGTGGTGGATGGACAATTACCTGGCAAGGTCAATTTGGCAACAAC CTCACAACTGTTACGACCATCCTCGAAGGAGTGAGCAACACAGTCGATCCCAGTACTGAAGTTGTGTACAAGGAGAGCCCCAATGTGAATTTCACCACAT CAAACAACTTCTCCTACGGCATCGTGTCATTCCTCGAAACTGGGCAGCCAGCGGTGATCCAGCCCCACGTAGCCAATATTGATGCCCTCGTAGCTGCTTG GCTCCCTGGTACTGAAGGCTGCCAAGGTGTTGCCGATGTCTTGTTTGGTGATTATGGTTTCACTGGACAGCTGGCCAGGACATGGTTCAAGTCAGTCGAT CAACTCCCAGTTGAAAAGTCGAGAATAGTTGCCATTAGTTTCGCTTTAATTTCCTTTCAAGTGATTTCATTCCATCTTAATCACATCTCTGCATGTTAA
AA sequence Show only first row Show all	>Lus10018102 pacid=23145260 polypeptide=Lus10018102 locus=Lus10018102.g ID=Lus10018102.BGIv1.0 annot-version=v1.0 MLSLAGSMVNVFTTVPDILPTKPQPAHNNITVGRWVYSINKIQNAALSTPLAIPMLYGIDAVHGHNYAYKAPIFPHNIGLGVTRDSDLVKRIGAATAAEI RATGVHYAFSPTIVVCRDPRWGRCFESYSEDPSIVTQMTEIIPGLQGEIPPNSNHGVPFVNARDKTKMAACAKHYVGDGGTVKGIDRNNTVIPWDGLMKT HMLPYLDAIYKGVSTVMVSYSSWNGKKMHANRKLITSFLKNKLKFRGFVVSDWLGVERITTPEHANYSNSIQAALKAGIDMGIHQGPHIQSRESHNPMST IDDAVSRILRVKFTMGLFETPLADHTMASELGKKEHRELAREAVRKSLVLLKNGKSGEEPLLPLQKKGAPKILVAGSHAHNLGLQCGGWTITWQGQFGNN LTTVTTILEGVSNTVDPSTEVVYKESPNVNFTTSNNFSYGIVSFLETGQPAVIQPHVANIDALVAAWLPGTEGCQGVADVLFGDYGFTGQLARTWFKSVD QLPVEKSRIVAISFALISFQVISFHLNHISAC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20950			Glycosyl hydrolase family prot...		Lus10018102 [exp]	0	1
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10037471 [exp]	6.2	0.7569
AT4G18340			Glycosyl hydrolase superfamily...		Lus10023309 [exp]	9.4	0.7365
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	10.0	0.7508
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Lus10035316 [exp]	15.4	0.7255
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	16.9	0.7457
					Lus10020808 [exp]	19.3	0.6481
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	21.9	0.6870
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	22.4	0.6870
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	23.0	0.6870
					Lus10022875 [exp]	23.2	0.7298

Compare expression of checked genes

Lus10018102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.