Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49220 761 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 724 / 0 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G14310 449 / 3e-151 ATPME3 pectin methylesterase 3 (.1) AT1G53830 430 / 4e-144 ATPME2 pectin methylesterase 2 (.1) AT1G11580 416 / 5e-139 ATPMEPCRA methylesterase PCR A (.1) AT3G43270 413 / 4e-138 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 408 / 3e-136 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT4G02300 407 / 7e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 406 / 8e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 402 / 4e-134 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022412 [exp] 979 / 0 AT3G49220 761 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 444 / 6e-150 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 439 / 4e-148 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 439 / 5e-148 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10006103 [exp] 429 / 2e-145 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10009110 [exp] 426 / 4e-143 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 421 / 4e-141 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 419 / 5e-140 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003933 [exp] 419 / 1e-139 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014500 [exp] 810 / 0 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 808 / 0 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 457 / 4e-155 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 456 / 4e-154 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.002G145500 [exp] 439 / 2e-148 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 439 / 4e-148 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 437 / 6e-148 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 433 / 4e-146 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162400 [exp] 432 / 4e-145 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.011G135000 [exp] 428 / 8e-144 AT1G11580 560 / 0.0 methylesterase PCR A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10018103 pacid=23145189 polypeptide=Lus10018103 locus=Lus10018103.g ID=Lus10018103.BGIv1.0 annot-version=v1.0 ATGGACAGAGTCAAACTAGACTACGGCCGCCTCGCCCCCCCCGACCACACTACTTCCGGCCCCACCACCGCCTCCGGCACCACCACAGCCTCGCATCATC CTCCTCCTCCCTCCACCCGTAAACGCAAACTCATCATCCTCTCCCTCCTCTCCCTCTCACTAATCATCGCCTCCGCCATTTCCGCCGCCTTTCTCGTCAC CTCCCGCTCCCGAGGTACGGGCCATCTAGATCCGACCCGACACCGCAGGCCCTCCCAGGCCATATCCCGGACCTGCACCAAAACCCGTTACCCGACCCTC TGCCTGAACTCCCTAACCGAATTCCCCGGCTCCCTGACTGCCAATGAGGATGATCTCGTCCACATTTCCTTTAACATGACCCTGCAGCACCTGAACCGGG CCCTCTACCTCTCCTCCTCCATGAGCAGCTCCCTCCCCACCGACGACGAACTACCCGACGAACTTGCCCGCTCCGCTTACGACGACTGCCTCGAGCTCCT CGACGACTCCATTGACGCCCTCTCTCAGTCCCTGTCCGCCGTAGGCGGCGGCAGCGGAGGAGGAGGATCAGCGACAACGACGGACGTGTCCACGTGGCTG AGTGCGGCGCTGACGAATCAGGACACGTGCGCAGAGGGGCTAGCGGACGTTAAGCCCGGGGCGGCGAAGATGGAGATGGAAAGGAAGCTTAAGGATCTGA CTGAGCTGATCAGCAATTGCCTCTCGATATTTTCGGCGACGGACAATGGGGATTTCGCCGGAGTGCCGATCCAAAACAGGCGGCTGCTTGAGTCTGCCAC GGCGGCGGAAGAGGAGGAGGAGGAGGGGGAAGTAGAGTTTCCGAATTGGGTTGGGAGGAAGGAGAGGAGGCTGCTGAGTCTTCCGCCGTCGGCAATTAAG GCGGATATAATCGTGTCGGCAGACGGGAATGGGACTTTCAAGACGATCGGAGAGGCGATTAAGAAGGCCCCGGAGCTCAGCAACCGGCGGACCGTAATTT ACGTCAGGGCAGGAAGGTACGAGGAGAACAACCTGAAAGTGGGGAGGAAGAAATGGAACCTGATGTTCATAGGAGACGGGAAGGGCAAAACGGTCATAAC GGGAAAGAAGAGCGTTTTCGACAAGTTGACGACATTCCACACCGCTTCCTTCGCGGCAACCGGGGCTGGGTTCATAGCCAGAGACATGACATTCGAGAAC ACCGCCGGTCCGGCAAAGCACCAAGCGGTGGCACTCCGGATAGGAGCAGACCACGCGGTTATCTACCGCTGCAATGTGATCGGCTACCAAGACACCCTCT ACGTCCATTCCAACCGACAGTTCTACCGGGAGTGCGACATCTACGGCACCGTCGACTTTGTCTTCGGAAACGCCGCCGTTGTTCTCCAGAACTGTAGCTT CTACGCCCGGAAGCCCATGGACATGCAGAAGAACACGGTGACTGCCCAGAACCGGAAGGACCCGAACCAGAACACGGGAATTTCGATCCACGCTTCGAGG ATACTAGCAACACCTGACCTCCAGGCGTCCAAGGGAAGCTTCCAGACTTACCTTGGCCGGCCGTGGAAGCTCTACTCGAGGACGGTCGTAATGGTGACGT ATATTGGGGACCACGTTCATCCGAAGGGGTGGCTAGAGTGGAATGCCACGTTCGCACTTGACACGTTGTATTATGGAGAGTACATGAATTATGGGCCCGG TGCGGGTGTGGGCCAACGGGTGACATGGCCTGGGTATCGGGTTATCAAGTCGACGGTGGAGGCGAGCCGGTTCACGGTGGGTCAGTTTATATTCGGATCG TCGTGGTTGCCTTCGACTGGGGTGGCGTTTCTATCTGGACTCTCCACTTAA
AA sequence Show only first row Show all	>Lus10018103 pacid=23145189 polypeptide=Lus10018103 locus=Lus10018103.g ID=Lus10018103.BGIv1.0 annot-version=v1.0 MDRVKLDYGRLAPPDHTTSGPTTASGTTTASHHPPPPSTRKRKLIILSLLSLSLIIASAISAAFLVTSRSRGTGHLDPTRHRRPSQAISRTCTKTRYPTL CLNSLTEFPGSLTANEDDLVHISFNMTLQHLNRALYLSSSMSSSLPTDDELPDELARSAYDDCLELLDDSIDALSQSLSAVGGGSGGGGSATTTDVSTWL SAALTNQDTCAEGLADVKPGAAKMEMERKLKDLTELISNCLSIFSATDNGDFAGVPIQNRRLLESATAAEEEEEEGEVEFPNWVGRKERRLLSLPPSAIK ADIIVSADGNGTFKTIGEAIKKAPELSNRRTVIYVRAGRYEENNLKVGRKKWNLMFIGDGKGKTVITGKKSVFDKLTTFHTASFAATGAGFIARDMTFEN TAGPAKHQAVALRIGADHAVIYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFVFGNAAVVLQNCSFYARKPMDMQKNTVTAQNRKDPNQNTGISIHASR ILATPDLQASKGSFQTYLGRPWKLYSRTVVMVTYIGDHVHPKGWLEWNATFALDTLYYGEYMNYGPGAGVGQRVTWPGYRVIKSTVEASRFTVGQFIFGS SWLPSTGVAFLSGLST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49220			Plant invertase/pectin methyle...		Lus10018103 [exp]	0	1
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10028285 [exp]	2.2	0.8151
					Lus10005901 [exp]	2.8	0.8750
					Lus10013331 [exp]	3.5	0.8453
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10022344 [exp]	4.6	0.8268
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10042166 [exp]	5.7	0.8207
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10012524 [exp]	16.2	0.8006
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031781 [exp]	20.8	0.7690
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	21.1	0.7858
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10008861 [exp]	21.6	0.8108
AT5G52790			CBS domain-containing protein ...		Lus10036040 [exp]	23.9	0.7620

Compare expression of checked genes

Lus10018103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.