Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24240 688 / 0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) AT2G46500 672 / 0 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT1G64460 449 / 1e-156 Protein kinase superfamily protein (.1) AT1G13640 228 / 7e-67 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G03890 226 / 9e-66 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT2G40850 221 / 9e-65 ATPI4KGAMMA1 ,PI4K GAMMA 1 phosphoinositide 4-kinase gamma 1 (.1) AT1G26270 218 / 5e-63 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT3G56600 206 / 2e-59 Protein kinase superfamily protein (.1.2) AT1G64470 155 / 7e-44 Ubiquitin-like superfamily protein (.1) AT1G27570 101 / 2e-22 phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022411 [exp] 1112 / 0 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10001817 [exp] 636 / 0 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10003190 [exp] 578 / 0 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10030251 [exp] 477 / 6e-167 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10004005 [exp] 472 / 4e-165 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10019197 [exp] 226 / 1e-65 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 220 / 2e-63 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 214 / 2e-61 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10018367 [exp] 60 / 7e-10 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014600 [exp] 817 / 0 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.015G013600 [exp] 792 / 0 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.014G099000 [exp] 727 / 0 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.001G090300 [exp] 699 / 0 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.010G137400 [exp] 230 / 2e-67 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.008G112200 [exp] 226 / 4e-66 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.017G101500 [exp] 209 / 5e-60 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.006G031600 [exp] 208 / 8e-60 AT2G40850 489 / 2e-168 phosphoinositide 4-kinase gamma 1 (.1) Potri.002G171400 [exp] 91 / 3e-22 AT1G64460 86 / 6e-22 Protein kinase superfamily protein (.1) Potri.011G026600 [exp] 60 / 6e-10 AT4G05050 452 / 3e-164 ubiquitin 11 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10018104 pacid=23145259 polypeptide=Lus10018104 locus=Lus10018104.g ID=Lus10018104.BGIv1.0 annot-version=v1.0 ATGTCAGTAGCAAGTGTCGCTCTTAGTCCTATTCAGGAGGAGTCCTCCAAGTTTTGGGAGAGTTCGCCTCTTAAGCATGGTCTACGTTCAAGGGACTCCA TCTTAATATTCCTTTCTGTTGTTGGTTCTCTCATCCCTATGCACAAGCAGAAGCTGGTTTTCAGTGGCAGGGAACTGGCTAATAACAACTCACTTGTGAC GGATTATGGTGTTACGGATGGGAATCTACTGCATTTGGTGGTCAGGCTATCCGATGTCCAAACTATAATAGTTAGGACTGCCTGTGGGAAGGAGTTTCAG TTCCACGTGGAAAGGGGTAGAAATGTTGGTTATGTTAAGCAACAAATTGCAAAGAAGGGGAAAGATTTTGTTCTTCTTGATCAAGAGTTGACTTGTGAAG GTGAGACTCTTGATGACCAGAGGCTTATTACTGACATATGCAAAAATAATGATGCTGTGGTTCACTTGATTAGTCGTAAGTCAGCAAAAGTAAGAGCAAC ACCTGTTGAGAAAGGTCTAGAGTTGAGCATTGAGGCACTGGATCTCGCTGAGAAAGGGACTAAGCTTGGAGCAGAGAAAACTTTATCTGTGGACAACCGG TTCGTATGTAGGAAACAGCTATTTAGAGAGACTTTTATTGAACCTCTGATTGTTAACTCGGAAACTGAATTCCCAGCAGTGATCAGAGAGCTAATCAACT CTACATTGAATGGCTTGGAGAGTGGAAAGGAACCAATTAGATCTTCTGAGGGATCTGGAGGAGCATATTTCATGCAGGATGCATCTGGTTTGAAATATGT GTCTGTTTTTAAGCCAATTGATGAGGAGCCAATGGCTGTGAATAACCCTCAAGGTTTGCCCTTGTCACTTGATGGTGAAGGTTTGAAGAAAGGAACTCGT GTTGGAGAAGGGGCAATACGAGAAGTTGCAGCTTACATTTTGGATTATCCAACAAGTGGACCGTGCTCATTAAACAAGAAGCAGAAGGGTTTTTCTGGGG TTCCACCCACAGTAATGGTCAAGTGCTTGCACAGTGGTTTCAATCATCCAGAAGGGTACGATGGTACTGAAAGAAGTGTGAAATTTGGCTCATTGCAAAT GTTCATGAAGAACAATGGGAGTTGTGAAGATATTGGTCCCAATGCTTTTCCTGTAGATGAAGTTCACAAGATTTCTGTACTAGACATCAGATTGGCAAAT GCAGACAGGCATGCTGGAAATATCTTAATGAGCAGAGATTCTAAGAAAGCACAAATTGAGCTTATTCCAATTGATCACGGCTACTGCCTACCTGAAAATT TTGAGGATTGCACATTTGAATGGCTTTACTGGCCGCAGGCCAAGCAGCCATACTCGGCCGATACCAGTGCATACATCAAAGCTCTTGATGCAGAGCAGGA TATTGCACTTTTGAGGTTCCACGGATGGGACTTACCATCGGCATGTGCACGCACATTGCGTATTTCGACAATGCTTCTGAAGAAAGGGGTAGAGAAGGGA CTTACCCCTTATGCCATCGGAAGCATTATGTGTCGCGAGACCGTAAAGAAGGAATCAGAAATCGAGCAGATCGTGCAGGAAGCACAGGACTCTGTTCTCC CAGGAAGCAGCGAGCCTGCATTTATGGAATGCGTTTCCCAGATCATGGATTACAGGCTCGAACGGCTTCTCGGTGAACGTGTAAATATGTAA
AA sequence Show only first row Show all	>Lus10018104 pacid=23145259 polypeptide=Lus10018104 locus=Lus10018104.g ID=Lus10018104.BGIv1.0 annot-version=v1.0 MSVASVALSPIQEESSKFWESSPLKHGLRSRDSILIFLSVVGSLIPMHKQKLVFSGRELANNNSLVTDYGVTDGNLLHLVVRLSDVQTIIVRTACGKEFQ FHVERGRNVGYVKQQIAKKGKDFVLLDQELTCEGETLDDQRLITDICKNNDAVVHLISRKSAKVRATPVEKGLELSIEALDLAEKGTKLGAEKTLSVDNR FVCRKQLFRETFIEPLIVNSETEFPAVIRELINSTLNGLESGKEPIRSSEGSGGAYFMQDASGLKYVSVFKPIDEEPMAVNNPQGLPLSLDGEGLKKGTR VGEGAIREVAAYILDYPTSGPCSLNKKQKGFSGVPPTVMVKCLHSGFNHPEGYDGTERSVKFGSLQMFMKNNGSCEDIGPNAFPVDEVHKISVLDIRLAN ADRHAGNILMSRDSKKAQIELIPIDHGYCLPENFEDCTFEWLYWPQAKQPYSADTSAYIKALDAEQDIALLRFHGWDLPSACARTLRISTMLLKKGVEKG LTPYAIGSIMCRETVKKESEIEQIVQEAQDSVLPGSSEPAFMECVSQIMDYRLERLLGERVNM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10018104 [exp]	0	1
AT5G64090			unknown protein		Lus10015829 [exp]	4.0	0.8475
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	8.3	0.8340
AT1G15710			prephenate dehydrogenase famil...		Lus10011483 [exp]	8.7	0.8429
AT3G57070			Glutaredoxin family protein (....		Lus10018025 [exp]	12.0	0.8238
AT4G02720			unknown protein		Lus10042601 [exp]	13.1	0.8247
AT2G45260			Plant protein of unknown funct...		Lus10001989 [exp]	13.3	0.8294
AT4G02720			unknown protein		Lus10022052 [exp]	15.7	0.8267
AT4G11350			Protein of unknown function (D...		Lus10036382 [exp]	16.4	0.8284
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	20.0	0.8275
AT5G40250			RING/U-box superfamily protein...		Lus10029178 [exp]	20.5	0.8065

Compare expression of checked genes

Lus10018104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.