Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16210 71 / 3e-13 F-box family protein (.1) AT3G07870 71 / 4e-13 F-box and associated interaction domains-containing protein (.1) AT4G12560 69 / 2e-12 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT2G40925 68 / 3e-12 F-box and associated interaction domains-containing protein (.1) AT1G13200 67 / 4e-12 F-box and associated interaction domains-containing protein (.1) AT5G49610 67 / 5e-12 F-box family protein (.1) AT3G06240 67 / 7e-12 F-box family protein (.1) AT4G04690 66 / 8e-12 F-box and associated interaction domains-containing protein (.1) AT3G17500 66 / 2e-11 F-box family protein (.1) AT3G23880 65 / 2e-11 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022410 [exp] 248 / 6e-80 AT2G31305 104 / 1e-27 inhibitor-3 (.1) Lus10001873 [exp] 117 / 1e-30 AT4G12560 45 / 2e-05 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038606 [exp] 87 / 8e-19 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10031020 [exp] 87 / 1e-18 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10013872 [exp] 87 / 2e-18 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10008870 [exp] 81 / 2e-16 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 81 / 2e-16 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10008871 [exp] 79 / 9e-16 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10017086 [exp] 77 / 2e-15 AT5G49610 500 / 7e-179 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G014700 [exp] 112 / 2e-27 AT1G12170 66 / 1e-11 F-box family protein (.1) Potri.012G014300 [exp] 108 / 3e-26 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.015G013500 [exp] 99 / 9e-23 AT4G10190 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) Potri.015G013800 [exp] 97 / 5e-22 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 96 / 1e-21 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058000 [exp] 90 / 1e-19 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.001G035500 [exp] 88 / 7e-19 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 87 / 1e-18 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G012200 [exp] 84 / 1e-17 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G011400 [exp] 83 / 3e-17 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10018106 pacid=23145193 polypeptide=Lus10018106 locus=Lus10018106.g ID=Lus10018106.BGIv1.0 annot-version=v1.0 ATGAACACAAAATCTCTCCCTGAAGAAATCATAACCGAAATCCTCATACGGTTACCAGTTAAATCAATTCTCCGATTCAAGTCCGTGTCAAAGCACTGGT ATAGTCTCTTAACCGATCGTCATTTCAGCGCCGCCCACCTCCACCATCATTCTTCCTCCTCATCAACCAGCTCTCTGTTAATCGTCCGCCATGGGACCTC TCTTGGAAATCTCACAACCTCAGTCTTCGACGTCAATCTCGCAACCCTTTACCGCAGTTTATCGGTACCCGAAAATCGACTCGACGATCGTTCCCCATCA ATTATCGGGTCCTGCAACGGCTTGCTCTGCATCGAATTCTGCTCTGACAACATCCTGTTCTGGAATCCCGCCACCAAGTCGTCGCGACAGGTACCAAGCT TCAATCTTAGATCTCAATTCACCCACTTGACAACGAGGTTCGTCTCGATCGGTGAGTGCCCTGGTTTCGGATTCAATTCCGAGATCGGAGATTACAAGCT GGTGAAATTCGCGATGTTCTACTACAAGGATTGGAGAGCAGAGGATCAGGCGATATGGGACGATGTTCTAGAAGTGAAAGCCGTAGTGTTCTCTTGGAAA ACTTGGTCTTGGAAAGTACTGAAAAATACCCATAATATCCCTGCTGCCACCTATGACAACCAAGTGGCCGCCAATGGCCATTTGTACTGGATCGGATCTC GAGACGGAATGAGGGATTTCGTGCTCGCGTTCGATTTGGTCAGCGATTCATTCCGTACGATTGAGTGGACAACGACGACGACGTCGGACGATCAAAACAT GTACAGGTTGGATATGGAGACGAGAGTTGCAGTGTTCAAAAGTTGCCTGATGGGTTTGACGGAAGACAATGACGATGATTTCGAGGTGTTGGTGATGAGT GAGAACGGGGCGAGAGTAGAAGGTACGGATTGGGAGAAGCTATGGAGTTATGGGTGCTTTGATGGGTATTATGATTATGGTGGGTATTGGAATGGACTTC AAGTTATAAGGAGGCGAGGGAGTTACAGGAGTTATCTTTACTTGTTTTGTCCAAGAAGTAATGTGGTTCGTTTGCTTGACGACATCTCAATTAGGTTTTA TGGTGTTGTAAATTATGTGGAGAGTTTAGTTCCCGTGACTGGAATCGATCAATGA
AA sequence Show only first row Show all	>Lus10018106 pacid=23145193 polypeptide=Lus10018106 locus=Lus10018106.g ID=Lus10018106.BGIv1.0 annot-version=v1.0 MNTKSLPEEIITEILIRLPVKSILRFKSVSKHWYSLLTDRHFSAAHLHHHSSSSSTSSLLIVRHGTSLGNLTTSVFDVNLATLYRSLSVPENRLDDRSPS IIGSCNGLLCIEFCSDNILFWNPATKSSRQVPSFNLRSQFTHLTTRFVSIGECPGFGFNSEIGDYKLVKFAMFYYKDWRAEDQAIWDDVLEVKAVVFSWK TWSWKVLKNTHNIPAATYDNQVAANGHLYWIGSRDGMRDFVLAFDLVSDSFRTIEWTTTTTSDDQNMYRLDMETRVAVFKSCLMGLTEDNDDDFEVLVMS ENGARVEGTDWEKLWSYGCFDGYYDYGGYWNGLQVIRRRGSYRSYLYLFCPRSNVVRLLDDISIRFYGVVNYVESLVPVTGIDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10018106 [exp]	0	1
					Lus10010825 [exp]	2.4	0.8676
					Lus10003784 [exp]	9.2	0.8525
AT1G30190			unknown protein		Lus10023301 [exp]	10.3	0.8878
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10002934 [exp]	13.9	0.8212
AT3G26590			MATE efflux family protein (.1...		Lus10036851 [exp]	16.1	0.8815
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10012531 [exp]	18.3	0.8686
AT2G20080			unknown protein		Lus10012982 [exp]	19.5	0.8730
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	20.8	0.8623
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10031674 [exp]	21.2	0.8345
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10042522 [exp]	23.7	0.7932

Compare expression of checked genes

Lus10018106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.