Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24260 962 / 0 prolyl oligopeptidase family protein (.1) AT2G47390 52 / 2e-06 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022408 [exp] 1389 / 0 AT5G24260 1037 / 0.0 prolyl oligopeptidase family protein (.1) Lus10010007 [exp] 54 / 3e-07 AT2G47390 1458 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10039405 [exp] 45 / 0.0002 AT4G14570 902 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G013400 [exp] 1156 / 0 AT5G24260 968 / 0.0 prolyl oligopeptidase family protein (.1) Potri.012G014900 [exp] 1154 / 0 AT5G24260 1027 / 0.0 prolyl oligopeptidase family protein (.1) Potri.014G120600 [exp] 57 / 6e-08 AT2G47390 1466 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.002G196000 [exp] 53 / 9e-07 AT2G47390 1394 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00930 [flax] [poplar] DPPIV_N Dipeptidyl peptidase IV (DPP IV) N-terminal region CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10018107 pacid=23145178 polypeptide=Lus10018107 locus=Lus10018107.g ID=Lus10018107.BGIv1.0 annot-version=v1.0 ATGCAATCAGTTGATGAGAGTGATAACAAGAAGTTGAAGAGATCATCAGACGAAGACATGCCTACAACGGACAGTACCAGTCCACAAAATGTGGATCATG ACTCCATTTTCTTCCCGGTTGAAGAGATTGTTCAATCTCCATTACCAGGATATGTAGCTCCCACAGTTATAAGCTTCAGCCCCGATGATTCCTTGATTGC ATTCTTGTATAGTCCTGATCACACCCTCACTAAGAAGGTCTATACGTTGGATCTCAAGACTGGGAACCAGGATTTGCTGTTTGCCCCACCAGATGGTGGA CTTGATGAGAGTAACTTATCAGCAGAAGAAAAATTGAGGAGGGAGCGTCTGAGGGAGCGTGGGTTAGGGGTGACTCGGTACGAATGGGCCAAGACGAGCT CCAAAAAGAAGACCATCATGGTGCCATTGCCCGCCGGGATCTATTTCCAAGAACTGTCTTCTTCAAAGCCTCAACTCAAGCTTCCAAGCTCATCAACTTC GCCCATCATTGATCCTCATCTCTCCCCAGACGGTTCCATGCTGGCTTATGTAAAAGACAGTGAACTACATGTTCTAAGTATCTTGTCTAATGAATCAAAA CAGCTAACTTCTGGTGCCAAGGGCAGTGAACTGACGCATGGTCTTGCAGAATACATTGCTCAGGAGGAAATGGACAGGAAAAATGGATACTGGTGGTCCC TTGATAGCAAATTCATAGCGTTAACACAGGTTGATTCATCTGAAATACCACTTTTTAGAATTATGCACCAAGGGAAAGACTGTGTTGGTTCCGAGGCACA GGAAGACCATGCTTATCCCTTTGCAGGCGCTTCAAATGTTAAAGTTCGTCTTGGGGTTGTCTCTGTTGTTGGTGGTCCTATCACTTGGATGGACCTATTG TGTGGTGGATCAGATAGATCCAATGACGAGGAATACTTGGCCCGGGTGAATTGGATGCATGATAATGTGCTCGTAGCTCAGGTTTTGAACAGGTCGCACA CCAATTTGAAGATCCTGAAGTTTGATATCAAGACAGGGGAAAGAGAAGTCATAATGGAGGAAAATCAAGAGCCCTGGATCAATTTACATGACTGCTTCAC TCCCTTGGATAAGGGTGGAGGTTTCATTTGGGCTAGTGAGAAAACTGGATACAAACATCTATATCTGCACGATGTAGATGGAACTTGCTTAGGACCTATT ACAGAAGGCCAGTGGATGGTTGAGCAGATTGCTGGAGTAAATGAGGCTGCAGGATTCATTTATTTGACGGCAACCCTCGATAGTCCCTTGGAATCAAATC TGTACCGTGCGAAATTGTATCAGGATGGCAACCAAATCTCTGAGGCTCCTGTCAGGTTAACACATGGTAAGGGGAAGCATGTGGTTGTGCTTGATCACCA TATGAGGAATTTTATTGATGTTCATGATTCCATTGATTCCCCCCCTAGGCTTCTACTTTGCTCCTTGCTGGATGGAAGTCTGATAACGTTGCTCTTTGAG CATCCGCTCAACATTCCAAGATTTACTAGGCTTGAACTTGAGCGTCCAGAGTTTGTTCAGATACAGGCGAATGATGGGACTATTTTGTATGGAGCTTTGT ATAAACCTGATCCCGTTAGATTTGGACCCCCACCATACAAAACTGTAATAAGTGTGTATGGTGGTCCTGGTGTGCAGTGTGTCTATGATTCTTGGATAAA TACAGTCGATATGAGAGCACAGTACTTTCGGAGCAAAGGCATCTTAGTATGGAAGTTGGATAACAGAGGAACATCTCGAAGGGGGCTTAAGTTTGAAGGT GTGATCAAATGCAATGCTGGCAGAATTGATGCAGACGACCAGCTGGCAGGAGCAGAATGGCTCATTAAACAAGGGCTGGCACAAGCCGGCCACATTGGGT TGTATGGATGGAGCTATGGTGGGTACATGTCATCGATGATCTTGGCGAGGTTTCACAACACTTTCTGCTGTGCTGTAGCGGGTGCTCCAGTCACTTCGTG GGACGGGTACGACACGTTTTATACGGAGAAGTATATGGGACTGCCTGAAGAAGACGCCAAAGCATATGACTATGGCTCGGTGATGCATCATGTGCATATG CTAAGAGGGAGGTTGATGCTGGTGCATGGAATGATCGACGAGAATGTTCATTTCAGGCACACGGCAAGGCTTGTGAATGCGTTGATAGCAGCGAGAAAGC AGTATGAGCTGTTGATATTCCCGGATGAACGACACATGCCTAGGGGACATAAGGACAGGGTATACATGGAAGAGAGAATCTGGGAATTCATGCAGAGGAA TCTGTGA
AA sequence Show only first row Show all	>Lus10018107 pacid=23145178 polypeptide=Lus10018107 locus=Lus10018107.g ID=Lus10018107.BGIv1.0 annot-version=v1.0 MQSVDESDNKKLKRSSDEDMPTTDSTSPQNVDHDSIFFPVEEIVQSPLPGYVAPTVISFSPDDSLIAFLYSPDHTLTKKVYTLDLKTGNQDLLFAPPDGG LDESNLSAEEKLRRERLRERGLGVTRYEWAKTSSKKKTIMVPLPAGIYFQELSSSKPQLKLPSSSTSPIIDPHLSPDGSMLAYVKDSELHVLSILSNESK QLTSGAKGSELTHGLAEYIAQEEMDRKNGYWWSLDSKFIALTQVDSSEIPLFRIMHQGKDCVGSEAQEDHAYPFAGASNVKVRLGVVSVVGGPITWMDLL CGGSDRSNDEEYLARVNWMHDNVLVAQVLNRSHTNLKILKFDIKTGEREVIMEENQEPWINLHDCFTPLDKGGGFIWASEKTGYKHLYLHDVDGTCLGPI TEGQWMVEQIAGVNEAAGFIYLTATLDSPLESNLYRAKLYQDGNQISEAPVRLTHGKGKHVVVLDHHMRNFIDVHDSIDSPPRLLLCSLLDGSLITLLFE HPLNIPRFTRLELERPEFVQIQANDGTILYGALYKPDPVRFGPPPYKTVISVYGGPGVQCVYDSWINTVDMRAQYFRSKGILVWKLDNRGTSRRGLKFEG VIKCNAGRIDADDQLAGAEWLIKQGLAQAGHIGLYGWSYGGYMSSMILARFHNTFCCAVAGAPVTSWDGYDTFYTEKYMGLPEEDAKAYDYGSVMHHVHM LRGRLMLVHGMIDENVHFRHTARLVNALIAARKQYELLIFPDERHMPRGHKDRVYMEERIWEFMQRNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24260			prolyl oligopeptidase family p...		Lus10018107 [exp]	0	1
AT5G13560			unknown protein		Lus10040337 [exp]	1.0	0.7790
AT1G51690		ATB ALPHA, ATBA...	protein phosphatase 2A 55 kDa ...		Lus10007401 [exp]	12.0	0.7097
AT2G29190		APUM2	pumilio 2 (.1.2)		Lus10040782 [exp]	14.8	0.7026
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10039491 [exp]	26.3	0.6902
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	30.6	0.6514
AT1G75980			Single hybrid motif superfamil...		Lus10005613 [exp]	30.8	0.6015
AT4G01290			unknown protein		Lus10036389 [exp]	33.0	0.6793
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10034723 [exp]	36.5	0.6676
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	42.1	0.6872
AT4G15240			Protein of unknown function (D...		Lus10039693 [exp]	47.7	0.6708

Compare expression of checked genes

Lus10018107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.