Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24270 295 / 2e-102 ATSOS3, CBL4, SOS3 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) AT4G17615 269 / 3e-92 ATCBL1, SCABP5, CBL1 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) AT5G47100 267 / 1e-91 ATCBL9, CBL9 calcineurin B-like protein 9 (.1) AT4G26570 259 / 5e-88 ATCBL3 calcineurin B-like 3 (.1.2) AT5G55990 255 / 9e-87 ATCBL2, CBL2 calcineurin B-like protein 2 (.1) AT1G64480 252 / 1e-85 CBL8 calcineurin B-like protein 8 (.1) AT4G33000 251 / 8e-85 SCABP8, ATCBL10, CBL10 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) AT4G16350 204 / 1e-66 SCABP2, CBL6 SOS3-LIKE CALCIUM BINDING PROTEIN 2, calcineurin B-like protein 6 (.1) AT4G01420 197 / 3e-64 CBL5 calcineurin B-like protein 5 (.1) AT4G26560 179 / 9e-57 CBL7 calcineurin B-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022407 [exp] 379 / 9e-136 AT5G24270 331 / 1e-116 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10011028 [exp] 266 / 4e-91 AT4G17615 359 / 5e-128 SOS3-LIKE CALCIUM BINDING PROTEIN 5, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, calcineurin B-like protein 1 (.1.2) Lus10030252 [exp] 262 / 2e-89 AT5G24270 269 / 4e-92 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Lus10023069 [exp] 255 / 1e-86 AT1G64480 263 / 6e-90 calcineurin B-like protein 8 (.1) Lus10001816 [exp] 252 / 1e-85 AT1G64480 271 / 3e-93 calcineurin B-like protein 8 (.1) Lus10032400 [exp] 255 / 4e-84 AT1G64480 263 / 3e-87 calcineurin B-like protein 8 (.1) Lus10003191 [exp] 246 / 5e-83 AT1G64480 264 / 2e-90 calcineurin B-like protein 8 (.1) Lus10015630 [exp] 243 / 2e-81 AT4G33000 322 / 3e-112 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3) Lus10037648 [exp] 240 / 2e-80 AT4G33000 328 / 2e-114 SOS3-LIKE CALCIUM BINDING PROTEIN 8, calcineurin B-like protein 10 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015100 [exp] 352 / 3e-125 AT5G24270 333 / 2e-117 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013100 [exp] 345 / 4e-122 AT5G24270 324 / 6e-114 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.015G013200 [exp] 298 / 8e-104 AT5G24270 291 / 8e-101 CALCINEURIN B-LIKE PROTEIN 4, SALT OVERLY SENSITIVE 3, Calcium-binding EF-hand family protein (.1.2) Potri.001G090200 [exp] 280 / 1e-96 AT1G64480 280 / 2e-96 calcineurin B-like protein 8 (.1) Potri.003G084200 [exp] 263 / 5e-90 AT5G47100 375 / 2e-134 calcineurin B-like protein 9 (.1) Potri.001G371700 [exp] 261 / 8e-89 AT5G55990 418 / 9e-151 calcineurin B-like protein 2 (.1) Potri.016G003500 [exp] 260 / 2e-88 AT5G55990 420 / 2e-151 calcineurin B-like protein 2 (.1) Potri.001G150200 [exp] 259 / 2e-88 AT5G47100 367 / 6e-131 calcineurin B-like protein 9 (.1) Potri.006G002900 [exp] 259 / 5e-88 AT5G55990 414 / 5e-149 calcineurin B-like protein 2 (.1) Potri.011G094900 [exp] 256 / 7e-87 AT4G26570 408 / 6e-147 calcineurin B-like 3 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018108 pacid=23145254 polypeptide=Lus10018108 locus=Lus10018108.g ID=Lus10018108.BGIv1.0 annot-version=v1.0 ATGGGTTGTTTCCAGTCGAAGACGACTAAACTAACTCCCGGTTACGAAGAGCCCATTGTTCTCGCTGCTGAAACACATTTTACAGTGAGCGAAGTTGAGG CATTGTATCAGCTCTTCAAGAAGTTAAGCAGTTCGATAATTGATGACGGTCTGATTCACAAGGAAGAGTTTCAGTTTGCGCTCTTCAGAAACAGAAACAG AAGGAACCTTTTTGCAGACAGGGTATTTGATTTATTTGATGTCAAGCGCAATGGGGTTATTGAGTTTGGAGAGTTTGTTCGATCTCTTGGCGTCTTTCAT CCAGATGCACCAGTTGAAGACAAGATTTCATTTGCTTTTAGACTGTATGATCTCAGGCAAACCGGTTTCATCGAGCGAGAAGAGCTAAAGGAGATGGTTG TGGCTCTTCTGCATGAGTCAGATCTAATGCTATCCGACGATGTTGTGGAATTAATTGTTGATAAGACGTTTGAGGATGCAGACTTGAAAGCCGATGGGAG AATCGACACGGAAGAATGGAAACAGTTTGTGAAGAAGAATCCATCTCTCATAAAGAACATGACTTTACCATACTTAAAAGATATAACGCTGGCGTTTCCG AGCTTTATACTGAGTTCTGAAGTGGAAGATTCAGAAATATAA
AA sequence Show only first row Show all	>Lus10018108 pacid=23145254 polypeptide=Lus10018108 locus=Lus10018108.g ID=Lus10018108.BGIv1.0 annot-version=v1.0 MGCFQSKTTKLTPGYEEPIVLAAETHFTVSEVEALYQLFKKLSSSIIDDGLIHKEEFQFALFRNRNRRNLFADRVFDLFDVKRNGVIEFGEFVRSLGVFH PDAPVEDKISFAFRLYDLRQTGFIEREELKEMVVALLHESDLMLSDDVVELIVDKTFEDADLKADGRIDTEEWKQFVKKNPSLIKNMTLPYLKDITLAFP SFILSSEVEDSEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10018108 [exp]	0	1
AT5G27730			Protein of unknown function (D...		Lus10020653 [exp]	15.5	0.8234
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	16.5	0.8465
AT2G30990			Protein of unknown function (D...		Lus10017644 [exp]	56.0	0.7964
AT3G49030			FBD, F-box and Leucine Rich Re...		Lus10029003 [exp]	56.6	0.7468
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	68.8	0.7955
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10037940 [exp]	75.0	0.7507
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10010395 [exp]	76.4	0.7779
AT2G31130			unknown protein		Lus10013926 [exp]	88.4	0.7588
AT5G47740			Adenine nucleotide alpha hydro...		Lus10002238 [exp]	107.0	0.7760
AT3G23360			Protein phosphatase 2C family ...		Lus10021171 [exp]	120.3	0.7768

Compare expression of checked genes

Lus10018108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.