Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49240 717 / 0 EMB1796 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G10270 281 / 2e-83 GRP23 glutamine-rich protein 23 (.1) AT1G12300 162 / 2e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 157 / 1e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 152 / 9e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G16880 150 / 4e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09060 150 / 5e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 147 / 2e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15630 145 / 1e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 145 / 2e-36 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022406 [exp] 1098 / 0 AT3G49240 769 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002990 [exp] 276 / 5e-81 AT1G10270 290 / 4e-86 glutamine-rich protein 23 (.1) Lus10024469 [exp] 213 / 2e-58 AT1G10270 620 / 0.0 glutamine-rich protein 23 (.1) Lus10018019 [exp] 156 / 3e-40 AT2G32630 590 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10042016 [exp] 153 / 3e-39 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014245 [exp] 149 / 9e-38 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10012328 [exp] 145 / 2e-36 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 144 / 7e-36 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 144 / 8e-36 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015400 [exp] 746 / 0 AT3G49240 613 / 0.0 embryo defective 1796, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G227800 [exp] 271 / 2e-79 AT1G10270 672 / 0.0 glutamine-rich protein 23 (.1) Potri.003G002950 [exp] 271 / 3e-78 AT1G10270 646 / 0.0 glutamine-rich protein 23 (.1) Potri.013G130600 [exp] 163 / 1e-43 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 156 / 4e-40 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 153 / 3e-39 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242200 [exp] 152 / 3e-39 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 151 / 1e-38 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 150 / 1e-38 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G149800 [exp] 151 / 2e-38 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018109 pacid=23145187 polypeptide=Lus10018109 locus=Lus10018109.g ID=Lus10018109.BGIv1.0 annot-version=v1.0 ATGGCGCTCTCCAAACCCGCTTTCTTCGCCCGCTGCAGAAACCTATCCATTCCCCTCTACCACAATCACCACCGAAGTCCCCTCCTCCCGCCTCCGCCAA TTTTTTTAGTCCGCTTGCTCTCCTTCTCCAGCCCAGAAGAAGCTGAGGCAGAGCGCCGCCGCCGCAAGCGTCGCCTCCGCATCGAACCCCCGCTCTCCTC CGCCCACCGCGCTCAGCAGCAGCAGCAGCAACAAATTCCCAAACCTAAACAAAACCCCAACGAATTCAAACTTCCCGAACCAATCTCCGCCCTCTCCGGC AACCGCCTAAACCTCCATAATCGCATCCTAACCCTAATCAGGGAGAACGACCTCGACGAGGCGGCGCTCTTCACCCGTCACTCTGTCTACTCCAACTGTC GCCCCACCATCTACACCGTCAATGCAGTCCTCAATGCCCAGTTTCGCCAGTCCAAGTACGCCGATTTGCTCTCTCTTCACCGTTTCATTATCCAAGCAGG TATCGCTCCCAACGTTATCACCCACAATTTAGTGTTCCAGACTTACATGACTTGCCGTAAACCGGATACTGCAATGGAAATCTATAAGCAGCTGATGAAT GACGCTCCCGTGGGTCCTTCTCCCACGACTTATAGGATTTTGATTGATGGTTTGGTGAATAATGGGATGGTTGATAAGGCTTTGCAGTTGAAGGAAGAAA TGGTGGAGACTATAGCCTTCTCTCCTGACCCTCTTATTTATCAGTATTTGATGAATGGCTGCGTGAAGAACAATGATGCTGATGCAGTTTTTAGGCTCTA TGAGGAGTTGAAGGAGAAGATGGGTGGATTGGTGAGTGATGGAGTGGTTTATGGAGGTCTGATGAAGGGATATTTTATGAGGGGCATGGAGAAGGAGGCC ATGGAGTGTTACGAGGAAGCGGTTGGTGAGAATTCCAAGGTCAAGATGTCTGCCATTGCCTGCAACTCTGTGCTGGATGCTTTATGCAAGAACGATAGGT TTGATGAAGCTTTGAAGTTGTTTGACAGAGTGATTCAAGAGCATAACCCACCAAGACATTTGGCTGTGAACTTGGGTACCTTTAACGTCATGGTTGATGG GTATTGCTCAAATGGGAGGTTTAAGGATGCCATTGATGTTTTCAGGAGGATAGGTGATTATAGATGCAGTCCAGACACATTGTCCTTCAATAATTTAATG GATCAGTTGTGTGGAAATGGAATGTTGGTTGATGCTGAAGAGGTATATGGTGACATGGAGGAAAAGGCGGTGAAACCAGATGAGTATACTTTTGGCTTGC TGATGGATGCTTGTTTTAAAGAAGGTAGAGTCGATGATGGTGCTGCTTATTTTAGGAAAATGGTTGATTCAGGTTTGAGGCCGGATTTGGCAGTTTACGA TAGATTGGTTGACACATTGGTTAAGGCAGGGAAGATTGACGAGGCGAAATCGTTCTATGAGCTGATGGTGAAGAAGCTGAAGATGAACGATGCGAGCTAC AAGTTCATAATGAAGGCCCTTAGCGATGAAGAGAGGTTGGATGAAGTGCTTAAATTGGTTGATGGGATGTTAGATGACGAGTCTATAGACTTCAACGAGG AACTGCAGGAGTTTGTGAAAGGAGACTTGTTGAGCAAGGAAGGAAGAGAAGAAGAATTGACCAAGCTTATGGAAGAGAAAGTGAGGCAGAAGGCTGAAGC AAAGGCAAAAGAGATTGAAGAAGCGGAGGCCACCAAGAGAAGGGCTAAAGTTGCGATTGCTTCTTTGTTCCCGTCAAAGCTGATTGGGAACAAGGAAAAT GCAGAGGAAACCAACAACGAGGCTGAGGCTGGTGTTGTTACGGATCAGGAAGCTGCTGTGGTAGGGTCTATATCCGACAATGCAGCAGATTCGAGAGACG AACATCAGCGAGCTTGA
AA sequence Show only first row Show all	>Lus10018109 pacid=23145187 polypeptide=Lus10018109 locus=Lus10018109.g ID=Lus10018109.BGIv1.0 annot-version=v1.0 MALSKPAFFARCRNLSIPLYHNHHRSPLLPPPPIFLVRLLSFSSPEEAEAERRRRKRRLRIEPPLSSAHRAQQQQQQQIPKPKQNPNEFKLPEPISALSG NRLNLHNRILTLIRENDLDEAALFTRHSVYSNCRPTIYTVNAVLNAQFRQSKYADLLSLHRFIIQAGIAPNVITHNLVFQTYMTCRKPDTAMEIYKQLMN DAPVGPSPTTYRILIDGLVNNGMVDKALQLKEEMVETIAFSPDPLIYQYLMNGCVKNNDADAVFRLYEELKEKMGGLVSDGVVYGGLMKGYFMRGMEKEA MECYEEAVGENSKVKMSAIACNSVLDALCKNDRFDEALKLFDRVIQEHNPPRHLAVNLGTFNVMVDGYCSNGRFKDAIDVFRRIGDYRCSPDTLSFNNLM DQLCGNGMLVDAEEVYGDMEEKAVKPDEYTFGLLMDACFKEGRVDDGAAYFRKMVDSGLRPDLAVYDRLVDTLVKAGKIDEAKSFYELMVKKLKMNDASY KFIMKALSDEERLDEVLKLVDGMLDDESIDFNEELQEFVKGDLLSKEGREEELTKLMEEKVRQKAEAKAKEIEEAEATKRRAKVAIASLFPSKLIGNKEN AEETNNEAEAGVVTDQEAAVVGSISDNAADSRDEHQRA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10018109 [exp]	0	1
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10014049 [exp]	3.0	0.9188
AT3G22670			Pentatricopeptide repeat (PPR)...		Lus10041193 [exp]	3.5	0.9153
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	5.4	0.9202
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10015340 [exp]	5.7	0.9193
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10030327 [exp]	9.8	0.9122
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10009302 [exp]	9.9	0.9084
AT5G20600			unknown protein		Lus10011961 [exp]	10.4	0.8998
AT5G05520			Outer membrane OMP85 family pr...		Lus10017441 [exp]	20.0	0.9120
AT3G02760			Class II aaRS and biotin synth...		Lus10030341 [exp]	23.5	0.9068
AT2G47990		SWA1, EDA13, ED...	SLOW WALKER1, EMBRYO SAC DEVEL...		Lus10008305 [exp]	23.9	0.8765

Compare expression of checked genes

Lus10018109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.