Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27880 535 / 0 Protein with RING/U-box and TRAF-like domains (.1) AT3G61790 527 / 0 Protein with RING/U-box and TRAF-like domains (.1) AT3G58040 458 / 2e-163 SINAT2 seven in absentia of Arabidopsis 2 (.1) AT2G41980 449 / 5e-160 Protein with RING/U-box and TRAF-like domains (.1) AT5G53360 413 / 8e-147 TRAF-like superfamily protein (.1) AT3G13672 225 / 7e-73 TRAF-like superfamily protein (.1.2) AT5G37870 103 / 3e-25 Protein with RING/U-box and TRAF-like domains (.1) AT5G37930 100 / 5e-24 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 96 / 8e-23 Protein with RING/U-box and TRAF-like domains (.1) AT1G66650 94 / 8e-22 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022405 [exp] 642 / 0 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10004001 [exp] 506 / 0 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10030248 [exp] 499 / 3e-179 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10002761 [exp] 462 / 2e-164 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 460 / 2e-163 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10013739 [exp] 440 / 4e-156 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10039202 [exp] 439 / 7e-156 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10009111 [exp] 57 / 2e-09 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 57 / 4e-09 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G015500 [exp] 572 / 0 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.015G013000 [exp] 567 / 0 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.002G171500 [exp] 547 / 0 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.014G099200 [exp] 543 / 0 AT3G61790 551 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G198600 [exp] 470 / 3e-168 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 470 / 3e-168 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.016G059700 [exp] 465 / 4e-166 AT3G58040 548 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.006G194100 [exp] 464 / 6e-166 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.001G026200 [exp] 445 / 2e-158 AT3G61790 450 / 2e-160 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G215400 [exp] 431 / 1e-152 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF03145 [flax] [poplar] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Lus10018110 pacid=23145199 polypeptide=Lus10018110 locus=Lus10018110.g ID=Lus10018110.BGIv1.0 annot-version=v1.0 ATGGAATTGGACAGCATCGAGTGCGTCTCATCCTCAGATGGTGGAATTGATGAGGACGAGATCCCTCACGACAATCTCCACCATCACCATCACCATCAGT TCTCTTCCTCCAAGTCTCACAATGCCGCCGCCAGTAACAACAACAACGCCGCCCGCCCTGGAATCAACGGTGTTCCCGGCCCCAACGCCATCACCCCTGC CACCAGCGTCCACGAGTTGCTTGAATGTCCCGTCTGTACGAATTCCATGTACCCGCCCATCCACCAGTGTAGCAATGGACATACACTGTGCTCCACTTGC AAAGTCAAGGTACATAATAGATGCCCTACTTGTAGACAGGAGCTGGGAGATATTAGGTGTCTAGCACTGGAAAAAGTGGCAGAATCTCTTGAATTACCCT GCAAATTTTATACTTTGGGATGCCCGGAGATATTTCCTTACTACAGTAAACTCAAGCACGAGACAGTTTGCAACTTCAGACCATACAATTGTCCATATGC TGGATCTGAATGCTCAGTTGTCGGGGATATACCTTCTCTTGTTGCTCATCTAAGAGATGAACACAAAGTCGACATGCACACAGGATGCACTTTCAACCAT CGATATGTAAAGGCTAATCCCCGTGAAGTGGAGAATGCCACTTGGATGCTGACGGTGTTTCATTGCTTCGGCCAGTATTTCTGTCTTCACTTTGAAGCCT TTCAGCTTGGGATGGCTCCAGTTTACATGGCGTTTCTACGATTCATGGGGGACGAGGCAGAGGCACGTAACTATAGCTACAGCCTGGAAGTGGGAGCGAA TGGTAGGAAGCTGATATGGGAAGGAACCCCACGAAGCGTACGGGATAGTCACCGTAAGGTGAGAGACAGCCATGACGGTCTAATTATTCAAAGAAACATG GCACTCTTCTTCTCAGGAGGGGATAGGAAAGAACTGAAGCTAAGAGTGACTGGGAGGATCTGGAAAGAGCAACAAAATCCGGAAGCCGGGGTGTGCATAC CAAATCTTTGTAGCTAA
AA sequence Show only first row Show all	>Lus10018110 pacid=23145199 polypeptide=Lus10018110 locus=Lus10018110.g ID=Lus10018110.BGIv1.0 annot-version=v1.0 MELDSIECVSSSDGGIDEDEIPHDNLHHHHHHQFSSSKSHNAAASNNNNAARPGINGVPGPNAITPATSVHELLECPVCTNSMYPPIHQCSNGHTLCSTC KVKVHNRCPTCRQELGDIRCLALEKVAESLELPCKFYTLGCPEIFPYYSKLKHETVCNFRPYNCPYAGSECSVVGDIPSLVAHLRDEHKVDMHTGCTFNH RYVKANPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEAEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNM ALFFSGGDRKELKLRVTGRIWKEQQNPEAGVCIPNLCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27880			Protein with RING/U-box and TR...		Lus10018110 [exp]	0	1
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	1.4	0.9405
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	1.4	0.9334
AT5G26751		ATSK11 ,SK 11	ARABIDOPSIS THALIANA SHAGGY-RE...		Lus10031440 [exp]	6.5	0.9012
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Lus10011762 [exp]	6.6	0.9011
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	7.7	0.9125
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	9.5	0.9136
AT3G53490			unknown protein		Lus10003989 [exp]	9.5	0.9084
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10021659 [exp]	9.9	0.9080
AT4G29960			unknown protein		Lus10001629 [exp]	10.2	0.9077
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10037203 [exp]	12.0	0.9131

Compare expression of checked genes

Lus10018110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.