Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41150 555 / 0 unknown protein AT3G56750 553 / 0 unknown protein AT2G04280 87 / 3e-18 unknown protein AT4G12700 87 / 4e-18 unknown protein AT4G08810 78 / 2e-15 SUB1 calcium ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022403 [exp] 805 / 0 AT2G41150 560 / 0.0 unknown protein Lus10023250 [exp] 632 / 0 AT2G41150 547 / 0.0 unknown protein Lus10008860 [exp] 627 / 0 AT2G41150 545 / 0.0 unknown protein Lus10041091 [exp] 88 / 1e-18 AT2G04280 745 / 0.0 unknown protein Lus10036415 [exp] 88 / 2e-18 AT2G04280 828 / 0.0 unknown protein Lus10013761 [exp] 77 / 9e-15 AT4G08810 836 / 0.0 calcium ion binding (.1) Lus10039176 [exp] 74 / 4e-14 AT4G08810 845 / 0.0 calcium ion binding (.1) Lus10039175 [exp] 58 / 4e-09 AT4G08810 463 / 5e-163 calcium ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035600 [exp] 633 / 0 AT3G56750 549 / 0.0 unknown protein Potri.006G040400 [exp] 617 / 0 AT3G56750 567 / 0.0 unknown protein Potri.014G170200 [exp] 87 / 4e-18 AT2G04280 862 / 0.0 unknown protein Potri.001G005500 [exp] 82 / 9e-17 AT4G08810 762 / 0.0 calcium ion binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018111 pacid=23145235 polypeptide=Lus10018111 locus=Lus10018111.g ID=Lus10018111.BGIv1.0 annot-version=v1.0 ATGGCGACAACTCACAAACCTCTGAAGCTGAAACACCGACCCAGATCCTCAATCTTAAACCTGCTGATCTGGGTAGCCGCGGTTGCACTTCTTTTCATCT TCTCATCCCTGATTTCAACGAATGGGTCCTCCTTCCCCTCTATGAATGTCATCAAGGGCCTAATGAGCTCCAAACGATCCAAGCGGGAGCACACTCTACA TGACAAGTATTTGTACTGGGGGAATAGAATTGATTGTCCTGGAAAGCATTGCGACTCTTGTGAAGGTCTGGGTCACCAGGAGTCCAGCCTCAGGTGTGCT CTTGAGGAGGCTTTGTTTCTCAACAGAACTTTTGTCATGCCTTCTAGAATGTGTATCAACCCGATCCACAATGAGAAGGGAATTCTTCATCATTCTGCCA ATTCAAATCCTGAAGAAAGGTGGACATCGAACTCTTGCAGGATGGACTCCTTGTATGATATAGACCTCATGTCTGAAACTGTCCCTGTTATCTTGGATAA TTCAAGAGAGTGGTTTCATGTTGTTTCTACTGCGATGAAGTTGGGATCAAGGGGAATTGCCCATGTTCAAGGAGTTAGTAGATCTGCACTCAAAGAAGGC AGTCACTACACCAACCTATTGCTCATAAATCTAACTGCAAGCCCTCTTTCATGGTTCATGGAGTGCAAGGACAGAAACAACCGCAGTGCAATAATGCTGC CATACACATTTCTACCTTCAATGGCATCAGAGAGATTGCGAGATGCTGCGGATACGATCATATCGCAACTTGGAGATTATGATGCTATCCATGTTCGCCG TGGCGATAAAATCAAAACAAGGAAGGATAGGTTTGGTGTTCCTCGAACCCTACATCCTCATTTGGACAGGGACACGCGCCCAGAATTTATGCTTCGGAGA ATAGAAAAATGGGTTCCTCCTGGAAGAACACTTTTTATTGCTTCAAATGAGAGGACGCCAAATTTCTTTTCACCTCTTTCCGTCAGATATAAGCTAGCAT ATTCGTCAAACTACAGCAAGATGCTGGAGCCTTTGATTCAGAACAACTACGAACTCTTCATGATCGAAAGGCTGATATTGCGGGGTGCAAAAACATTTAT CAAAACATACAAGGAAGATGAGACTGATCTCAGCCTCACGGACGACCGAAAGAAGAACACGAAGATATGGCAGCAGAACCCGAAGATATGGCAGCTGCCT GTGTATACCGCTGACGACAAACAAGACTAA
AA sequence Show only first row Show all	>Lus10018111 pacid=23145235 polypeptide=Lus10018111 locus=Lus10018111.g ID=Lus10018111.BGIv1.0 annot-version=v1.0 MATTHKPLKLKHRPRSSILNLLIWVAAVALLFIFSSLISTNGSSFPSMNVIKGLMSSKRSKREHTLHDKYLYWGNRIDCPGKHCDSCEGLGHQESSLRCA LEEALFLNRTFVMPSRMCINPIHNEKGILHHSANSNPEERWTSNSCRMDSLYDIDLMSETVPVILDNSREWFHVVSTAMKLGSRGIAHVQGVSRSALKEG SHYTNLLLINLTASPLSWFMECKDRNNRSAIMLPYTFLPSMASERLRDAADTIISQLGDYDAIHVRRGDKIKTRKDRFGVPRTLHPHLDRDTRPEFMLRR IEKWVPPGRTLFIASNERTPNFFSPLSVRYKLAYSSNYSKMLEPLIQNNYELFMIERLILRGAKTFIKTYKEDETDLSLTDDRKKNTKIWQQNPKIWQLP VYTADDKQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41150			unknown protein		Lus10018111 [exp]	0	1
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	1.0	0.8095
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10017555 [exp]	7.5	0.7486
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10001631 [exp]	8.8	0.8013
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10035756 [exp]	16.2	0.7290
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10028427 [exp]	16.9	0.7479
AT3G16270			ENTH/VHS family protein (.1)		Lus10025811 [exp]	17.1	0.7267
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	18.7	0.7470
AT1G20540			Transducin/WD40 repeat-like su...		Lus10021818 [exp]	19.6	0.7004
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10004626 [exp]	20.2	0.7244
AT1G26300			BSD domain-containing protein ...		Lus10019194 [exp]	20.3	0.7584

Compare expression of checked genes

Lus10018111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.