Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18593 149 / 5e-44 dual specificity protein phosphatase-related (.1) AT3G23610 75 / 8e-16 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 69 / 7e-14 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT5G23720 61 / 5e-10 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT3G55270 57 / 1e-08 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT2G04550 42 / 0.0003 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022402 [exp] 679 / 0 AT4G18593 147 / 2e-43 dual specificity protein phosphatase-related (.1) Lus10013913 [exp] 139 / 3e-40 AT4G18593 169 / 6e-55 dual specificity protein phosphatase-related (.1) Lus10001888 [exp] 125 / 4e-35 AT4G18593 149 / 5e-47 dual specificity protein phosphatase-related (.1) Lus10013914 [exp] 125 / 5e-35 AT4G18593 148 / 1e-46 dual specificity protein phosphatase-related (.1) Lus10034033 [exp] 75 / 3e-16 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10021940 [exp] 74 / 2e-15 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 68 / 5e-13 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10006229 [exp] 64 / 7e-11 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 64 / 1e-10 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G035700 [exp] 514 / 0 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.006G040300 [exp] 501 / 3e-179 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.004G056600 [exp] 136 / 2e-39 AT4G18593 172 / 2e-56 dual specificity protein phosphatase-related (.1) Potri.010G033000 [exp] 71 / 2e-14 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.010G210900 [exp] 58 / 6e-09 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.008G049900 [exp] 58 / 6e-09 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.015G105000 [exp] 57 / 2e-08 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.012G105800 [exp] 56 / 4e-08 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.014G160500 [exp] 45 / 3e-05 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10018112 pacid=23145190 polypeptide=Lus10018112 locus=Lus10018112.g ID=Lus10018112.BGIv1.0 annot-version=v1.0 ATGCCGCACCTCGTCCGGGAGAATCTCTTCATCGGCAACATCACCGATGCGGCGGAGGTCCTCGCCGGTACCTCCTCCGACATCACTCACCTCCTTTCCG TCTTGAGCTCCGCCTCCATCTCTTTCTTCTCCGAGTGGCGCCCCAGCCTCTCCATCCCCACCAAGGGGATTAAGAAGGTTTACTTCAACCGCCAGCGGGA CGGTCCAGCTCCTGACCAGGATGATGATGGTTCCGGCGCCAAGCTTATGTACTTGTTGGAGTACGCCGGCAACGACCTGAAATTAGTTCGGATGGCGGTG CCGATTAGGGATACGGAGAGCGAGGACCTTTTGGACTATTTGGAGGTGTGCTTGGATTTCATTGATCGTAGTCGGAAAGAAGGCTCTGTTATAGTTCACT GCTTTGCTGGTGTGTCCAGAAGTGCAGCTGTGATTACAGCATACTTGATGAGAAGTGAACAACTCAGTCTTGAAGATGCTCTTAAATCCCTCAGGGAAAG CTGCGAGTTTGTTTGCCCAAATGATGGCTTCCTAGATCAGTTAAAAATGTATGAGGATATGGGCTTCAAGGTCGATCATGGTAGTTCAGTTTACAAGCGC TTCCATGTGAAAATATTAGGTGACAGCTTTAACAGGGGAGACAAGATAGACAGTGCTCTGTTTGCTGCGGATCCTGGTGTAGCTGCAGAAGTCACGCCAC CACCAAATGGAGACAGAAAGCGAGACCAAGCATATCGATGCAAAAAGTGCCGAAGGCTTGTTGCGTTGCAGGAAAACGTTGTAGATCATGTTCCGGGAGA GGGCGAAACATCTTTCTCATGGAACAAACGAAAAAGTGGGAATCCATTTAGCAAGTCCGACGGGGCGGATTGTTCATCCATCTTTATCGAGCCTCTACGA TGGATGACTGCAGTGGAAGAAGGGGGGCTAGAAGGGAAGTTGGCATGCGCACACTGCGATGCTAGGTTGGGATACTTCAACTGGGCGGGGATACAATGCA GCTGTGGGAGTTGGATTACCCCTGCTTTCCAGCTTCACAAAGGCCGAGTCGACGTCAGTACTCTGTAA
AA sequence Show only first row Show all	>Lus10018112 pacid=23145190 polypeptide=Lus10018112 locus=Lus10018112.g ID=Lus10018112.BGIv1.0 annot-version=v1.0 MPHLVRENLFIGNITDAAEVLAGTSSDITHLLSVLSSASISFFSEWRPSLSIPTKGIKKVYFNRQRDGPAPDQDDDGSGAKLMYLLEYAGNDLKLVRMAV PIRDTESEDLLDYLEVCLDFIDRSRKEGSVIVHCFAGVSRSAAVITAYLMRSEQLSLEDALKSLRESCEFVCPNDGFLDQLKMYEDMGFKVDHGSSVYKR FHVKILGDSFNRGDKIDSALFAADPGVAAEVTPPPNGDRKRDQAYRCKKCRRLVALQENVVDHVPGEGETSFSWNKRKSGNPFSKSDGADCSSIFIEPLR WMTAVEEGGLEGKLACAHCDARLGYFNWAGIQCSCGSWITPAFQLHKGRVDVSTL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18593			dual specificity protein phosp...		Lus10018112 [exp]	0	1
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10025657 [exp]	5.7	0.8188
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	11.6	0.8165
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10006051 [exp]	16.9	0.7634
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	17.4	0.8103
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10041261 [exp]	19.4	0.7943
AT4G35830		ACO1	aconitase 1 (.1.2)		Lus10041858 [exp]	22.8	0.7552
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10024961 [exp]	23.2	0.7861
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	25.1	0.7884
AT1G26160			Metal-dependent phosphohydrola...		Lus10017897 [exp]	26.9	0.7610
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	29.3	0.7933

Compare expression of checked genes

Lus10018112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.