Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01110 279 / 4e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 260 / 4e-76 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 260 / 6e-76 RPF2 rna processing factor 2 (.1) AT1G63130 256 / 1e-74 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09060 257 / 2e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 256 / 2e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 253 / 2e-73 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63330 248 / 3e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64100 249 / 8e-72 pentatricopeptide (PPR) repeat-containing protein (.1), pentatricopeptide (PPR) repeat-containing protein (.2) AT1G63400 246 / 3e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022401 [exp] 1294 / 0 AT5G01110 281 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017684 [exp] 260 / 3e-75 AT4G28010 596 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 259 / 2e-74 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 258 / 3e-74 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 256 / 3e-73 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10038974 [exp] 252 / 4e-72 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 253 / 1e-71 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030513 [exp] 249 / 2e-71 AT3G09060 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 248 / 2e-70 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G052800 [exp] 973 / 0 AT5G01110 273 / 2e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G069600 [exp] 291 / 8e-87 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 278 / 3e-82 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 278 / 1e-81 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 277 / 3e-81 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 269 / 2e-77 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G105400 [exp] 269 / 2e-76 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 262 / 1e-75 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 258 / 1e-74 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 258 / 5e-73 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018113 pacid=23145212 polypeptide=Lus10018113 locus=Lus10018113.g ID=Lus10018113.BGIv1.0 annot-version=v1.0 ATGTCTGCAATACTTGTGCGGCAAGTGGCTGGCCACTTTAACAAGGTGCACCCATTCTTCATTGGTTTTGCACGAATTCATTCTTCACCCTACTATTACC TCCACCAATTTTCCCCCATTACTCGTTCCTTAAACCCCCACTCTTTGAACTCCAATGAATGCCGTCTCTTGGTTATTGGATTGTGTAAGTTGATTAAGAG ACGGAAAGGATACGTTGTTGCGGCCCTCTCTGAAAAGTTCTGTCCTTTCCTATTGGTGAAGACAATGGAAATGTTCAACTCCCGTGAAACCGCCTTTGCA TTCTTCAAACTTGTTTTTCAAAATGATTCCGAGGATACAGTCAAGTCCTACTGCATTGCTGCCCATGTCTTGGATTCACATGATCACAGGTACCTTGCAC AGGATGTAGTTTCGTGGGTTATCAGGAGAATTGGGTCTAAGAGGAGTAGAGGCTTGGTGCAATTTATGTGGGACCACCACAGTGAATATGAGTCTGATTT CTCAGTTCTCGACACCATCATGCGGAGTTTCTTGAATGCAAATATGGGTTATGAGGCTCTTGGTATTTTAGCCAGGATGAGGGACGCTGGTGTTAAGCCG AGTCCGTCTGCTATCACTATCTTGTTGAAGTTTTTGTTCAAAGTTGGTGATCTTGAGGGTGCCTTGATGTTTTTCAGGGACATTATTCGGATAGGATGTC AACCTGATAATTACAATATCAACACTATTATTCATGGTTTTTGTCAGAGAGGGCATGTCAGAGTTGGGGAGAGTCTGTTGTATATAATGCAGAAATTTCG TTGTCAACCGGATGTGTATACATACAACATTTTGATTAACGCGTATTGTATGAGGGCGCAAACTTCTGAGGCACTTTGTTGGTTAGATTTCATGATTCGG AGTGGCTGTAAGCCGACTACAGCTACAGTGAACACTGTAGTGAATGCATTCTGTAGTAAGGGAAAGGTAGAAGAAGCAAGAAAGATATTTGACGGGATTC ACGAGTTGGGTCTTTCCCCTAATGTCTCTATATTTAATACAATGTTGAATGGATATCTGAAGGCAAAGGACGTTGTTCAAGCAAATATGCTTTATGATGA AATGAAAAGCTCTGGCGTACCACCTGACGGTGTGACATTCAATATTTTGGTTGCTGGATATTATAGGTATGGAAGAGGAGAGGATGCTGACTGCTTGTTG ACAGATTTGCCTGTTTCGGGGTTACTTCCAACTTCTTCTTCACTATATGATATTGCCATTGCAAGGCTGTGCTGGGCAGGGCATTTAGATGAAGCAATTC AACTCCTAAAAGATATCCTTGAGAAGGGAGTGTATGTAAGTATTGTTGCTTTCAACTCAGTCATTGTTGCATGTTGCCAACTTGGAGAAGAAGAGAATGC CTATGAAACTTACAAACTCATGGTCAGTTTCGGTATATCTCCTTCTTCTTTAACATGCAGTTCGTTACTTATGGGCTTATCCATTAAGGGTCGTTTGCAG GAAGCATCAGAACTTTTGCATAAAATGATTGAGCAAGGATTTCATATTGATAGAAAAGCTTTTACTGTTATCCTGGATGGATATTTCAAGACAGGGGATG TAGATCGGGCTTGCATTCTATGGAAAGAAATGGAAAAGATGGGTACTTGTTTTGATGTTGTTGCCTATTCGGCTTTCATTGATGGCCTTTCTAAAGCAGG GATGATGGAGGAGGCATATAGTGTATTCTTGGAAATGTCAGTGAAAGGATGCATCCCTAACATTTTTACTTACAACTCCTTGATCCTTGGATTTTGCAAC TCTGGGAACATTAATCAAGCGCTACAATTGGAAAGAGAGATGAGGCAAAAGGGCTTTGAACCAGACACTTTCACAATTAATATCATCATCAATGGGTTCT GTAATTTAGGAAATATGAAGCTTGCTGAGGATGCAGTTGCAGACATGTTCCAATCTAGCTTGACCCCTGATATTGTCACATACAACACTTTGATCGGTGG ATATTGTAAAGCATTTCAACTGGTCCATGCAGATGAGCTCGTGAAGAAAATGTATGCCGGTGGATGGGAACCAGACATCACCACTTATAACATCCGAATT CATGGATTCTGTGGCAATCAAAAAATGAATCGAGCTGTTTTCTTGTTGAATGAGTTGATTACAATGGGTATTGTCCCAAACACGGTAACATACAACACAA TGATAAAAGGTGTTTGTATGGATGTTCTGGATCGTGCGGTAATCCTGACTGCTAGACTTCTTAAATTAGGGTTTGCTCCAAATGTTAGTACTATCAATAC ATTATTGTCCCAGTTTTGTAGGCAAGGAATGCCTGAGAGGACCCTAATGTGGATGCAGAGATTAAGAGAGCTTCCACTTGTTCTGGATGAAATTTCTTAT AAGATTACGGACAGAGCTTATTCAAATATCCAGAAGGAAGCTGAAGTTGCAAGGGCAACATATGAAAAGGGCCTCTTTCTGGATTTCCTCATGTACATCA CTTACGATTATTTATGCAGGAATAGTTGTCAGATTCAGATGATCACTAATGAGGATCCTCCTAAACTAGCTGCTTGTATTGGAGTTTGA
AA sequence Show only first row Show all	>Lus10018113 pacid=23145212 polypeptide=Lus10018113 locus=Lus10018113.g ID=Lus10018113.BGIv1.0 annot-version=v1.0 MSAILVRQVAGHFNKVHPFFIGFARIHSSPYYYLHQFSPITRSLNPHSLNSNECRLLVIGLCKLIKRRKGYVVAALSEKFCPFLLVKTMEMFNSRETAFA FFKLVFQNDSEDTVKSYCIAAHVLDSHDHRYLAQDVVSWVIRRIGSKRSRGLVQFMWDHHSEYESDFSVLDTIMRSFLNANMGYEALGILARMRDAGVKP SPSAITILLKFLFKVGDLEGALMFFRDIIRIGCQPDNYNINTIIHGFCQRGHVRVGESLLYIMQKFRCQPDVYTYNILINAYCMRAQTSEALCWLDFMIR SGCKPTTATVNTVVNAFCSKGKVEEARKIFDGIHELGLSPNVSIFNTMLNGYLKAKDVVQANMLYDEMKSSGVPPDGVTFNILVAGYYRYGRGEDADCLL TDLPVSGLLPTSSSLYDIAIARLCWAGHLDEAIQLLKDILEKGVYVSIVAFNSVIVACCQLGEEENAYETYKLMVSFGISPSSLTCSSLLMGLSIKGRLQ EASELLHKMIEQGFHIDRKAFTVILDGYFKTGDVDRACILWKEMEKMGTCFDVVAYSAFIDGLSKAGMMEEAYSVFLEMSVKGCIPNIFTYNSLILGFCN SGNINQALQLEREMRQKGFEPDTFTINIIINGFCNLGNMKLAEDAVADMFQSSLTPDIVTYNTLIGGYCKAFQLVHADELVKKMYAGGWEPDITTYNIRI HGFCGNQKMNRAVFLLNELITMGIVPNTVTYNTMIKGVCMDVLDRAVILTARLLKLGFAPNVSTINTLLSQFCRQGMPERTLMWMQRLRELPLVLDEISY KITDRAYSNIQKEAEVARATYEKGLFLDFLMYITYDYLCRNSCQIQMITNEDPPKLAACIGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10018113 [exp]	0	1
AT3G54460			SNF2 domain-containing protein...		Lus10039526 [exp]	3.0	0.8711
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	3.3	0.8843
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	3.5	0.8764
AT1G19485			Transducin/WD40 repeat-like su...		Lus10018573 [exp]	4.0	0.8343
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10028237 [exp]	4.9	0.8114
AT5G14770			Tetratricopeptide repeat (TPR)...		Lus10026206 [exp]	6.3	0.8706
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10016387 [exp]	6.5	0.8152
AT5G19070			SNARE associated Golgi protein...		Lus10021942 [exp]	12.0	0.8283
AT5G51340			Tetratricopeptide repeat (TPR)...		Lus10019124 [exp]	13.0	0.8348
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10002946 [exp]	13.1	0.8342

Compare expression of checked genes

Lus10018113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.