Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49260 224 / 2e-67 IQD21 IQ-domain 21 (.1.2.3) AT3G22190 69 / 3e-12 IQD5 IQ-domain 5 (.1.2) AT2G26180 62 / 2e-10 IQD6 IQ-domain 6 (.1) AT4G00820 56 / 4e-08 IQD17 IQ-domain 17 (.1) AT5G03040 56 / 4e-08 IQD2 IQ-domain 2 (.1.2.3) AT1G01110 55 / 8e-08 IQD18 IQ-domain 18 (.1.2) AT3G52290 52 / 8e-07 IQD3 IQ-domain 3 (.1) AT3G09710 52 / 8e-07 IQD1 IQ-domain 1 (.1.2) AT1G72670 50 / 1e-06 IQD8 IQ-domain 8 (.1) AT3G59690 45 / 6e-05 IQD13 IQ-domain 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022399 [exp] 651 / 0 AT3G49260 340 / 2e-112 IQ-domain 21 (.1.2.3) Lus10026486 [exp] 67 / 1e-11 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 64 / 9e-11 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 57 / 1e-08 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10041419 [exp] 56 / 4e-08 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10013522 [exp] 52 / 7e-07 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10004107 [exp] 52 / 8e-07 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10036508 [exp] 52 / 1e-06 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10015067 [exp] 50 / 1e-06 AT5G03040 206 / 2e-63 IQ-domain 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012500 [exp] 312 / 8e-102 AT3G49260 213 / 9e-64 IQ-domain 21 (.1.2.3) Potri.012G016200 [exp] 301 / 1e-97 AT3G49260 215 / 2e-64 IQ-domain 21 (.1.2.3) Potri.001G215200 [exp] 66 / 3e-11 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 64 / 7e-11 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.014G104600 [exp] 62 / 6e-10 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.010G218100 [exp] 60 / 1e-09 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.001G448100 [exp] 60 / 2e-09 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.016G086300 [exp] 59 / 4e-09 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G226600 [exp] 58 / 6e-09 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.002G178500 [exp] 54 / 2e-07 AT4G00820 458 / 1e-156 IQ-domain 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10018115 pacid=23145266 polypeptide=Lus10018115 locus=Lus10018115.g ID=Lus10018115.BGIv1.0 annot-version=v1.0 ATGGGTAAGAAGAGCGGCGGCGGTGGGTGGTTCTCTTCAGTCAAGAAAGTTTTCAAATCCTCGCCAAAGGATTCTTCGCCCCAGAAGAAGAAGGAGAATA ATAGTGGCGAGAAATGGCAGCACCACCACGATGCCCCTGAGGTTGTATCCTTTGAACATTTCCCAGCTGAGAGCTCCCCTGATGTCACAAATCAAGGAAG CTGTACGGCAACGTCCCCTGCTGCTTCTGAAGACAGAAACCACGCTATTGCTGTTGCTGCCGCCACAGCTGCTGCTGCACAAGCGGCAGTTGCAGCTGCC CAAGCTGCTGCTAAAGTGGTTCGATTGGCTGGATATGGTCGCCAGTCGAGAGAAGATAGAGCTGCTACCCTCATTCAATCACACTACAGAGGCTACCTTG CTAGGCGTGCCTTGCGTGCATTGAAAGGATTAGTGAGGCTGCAAGCGTTGGTAAGAGGCCATAATGTGCGTAAACAAGCGCAGATGACGATGCGATGCAT GCAAGCGCTTGTTCGAGTACAGGCTAGAGTAAGAGCTCGGAGGATGCAACTCACTCATGATAAGAAAGACCAACCCGAGGAAGAGGATGTGTATCGAGAC CGAGACACGAATCGAAGGAGTCCATTGAAGAAGAGTTATATGGTTGAGAGTTGGGATAACAGGCGCCAACTATTCAAAGACAAGGAAAATGCTCTCAAGA AACATGAAGCCGTCATGCAAAGAGACAAGGCACTTGCTTATGCTTATGCTTCTCAGCATCAAGAGCAAATATCGCAGCCCAGCCCAAACGGAATGGGCTT GGGCCTTTACTCTGACGAGCAAGCAAAAGCCCAGTGGGGTTGGAACTGGCTAGAACATTGGGTATCTCACAACGGCCGTCGTTTTGGCCCAACTGACCCT TCCTATGTAACATTGACGACCACCACCACAACCACCACCGATGACATGTCCGAGAAGACTGTCGAGCTGGACGTTGTTACTCCGACCAAGTTCTCTGGCA ATGGCACTGAGAACCTCAGCATAGGCGTCATGGACACAGGCAGGAGCGGCGTGTATTCAGCTCGGCCCAGAAGACAACCTTCGACCCCGAACAATGTCCC TAGTTACATGGCACCAACCCATTCAGCTAAGGCCAAGGTCCGGACCAATTTGGGCCCGGTGAAACAAACCAGCCCATATACCCCACAGTGGAACTCGTCA ACAAAGAGGGGACAAATTCTTGGGTCGTCATCAGTTTGTGACTCCTCTAGCTCCGGCGGAGGCACGTCGATTTACCATGTTCCGAAGAGCCCAAACCCTA AGGGTATGGCGATGCACTCTTTCTCTAGACGGCTGCCGGGGGACTATAGCCCGGATTCTAGAGGCGGCACTGACGAATGGAGACTTCCGACGAACGAGGG CCACCGCTGGAGGCATGATTTTGGGTGA
AA sequence Show only first row Show all	>Lus10018115 pacid=23145266 polypeptide=Lus10018115 locus=Lus10018115.g ID=Lus10018115.BGIv1.0 annot-version=v1.0 MGKKSGGGGWFSSVKKVFKSSPKDSSPQKKKENNSGEKWQHHHDAPEVVSFEHFPAESSPDVTNQGSCTATSPAASEDRNHAIAVAAATAAAAQAAVAAA QAAAKVVRLAGYGRQSREDRAATLIQSHYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRMQLTHDKKDQPEEEDVYRD RDTNRRSPLKKSYMVESWDNRRQLFKDKENALKKHEAVMQRDKALAYAYASQHQEQISQPSPNGMGLGLYSDEQAKAQWGWNWLEHWVSHNGRRFGPTDP SYVTLTTTTTTTTDDMSEKTVELDVVTPTKFSGNGTENLSIGVMDTGRSGVYSARPRRQPSTPNNVPSYMAPTHSAKAKVRTNLGPVKQTSPYTPQWNSS TKRGQILGSSSVCDSSSSGGGTSIYHVPKSPNPKGMAMHSFSRRLPGDYSPDSRGGTDEWRLPTNEGHRWRHDFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10018115 [exp]	0	1
AT2G47500			P-loop nucleoside triphosphate...		Lus10010300 [exp]	1.7	0.8919
AT5G06610			Protein of unknown function (D...		Lus10015972 [exp]	7.7	0.8878
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10017957 [exp]	8.1	0.8542
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Lus10043092 [exp]	9.9	0.8879
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	9.9	0.8311
AT3G59110			Protein kinase superfamily pro...		Lus10001423 [exp]	12.4	0.8642
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	13.4	0.8788
AT4G38050			Xanthine/uracil permease famil...		Lus10025716 [exp]	17.5	0.8763
AT5G58300			Leucine-rich repeat protein ki...		Lus10035012 [exp]	17.9	0.8657
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	24.5	0.8508

Compare expression of checked genes

Lus10018115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.